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Detailed information on CNT30144140


BLAST search results

BLAST vs Swiss-Prot:
sp|A4ULF8|METK_MEDSF, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673003Medicago truncatulaSetaria viridis46.3840.880.35173forward
CNT30521128Medicago truncatulaSetaria italica71.8536.6178.36268forward
CNT30374815Medicago truncatulaArabidopsis thaliana87.478.9383.74326forward
CNT3047442Medicago truncatulaPrunus dulcis75.3446.3784.34281forward
CNT30212612Medicago truncatulaHelianthus annuus41.5564.3285.81155forward
CNT30355133Medicago truncatulaLactuca sativa52.8222.5183.25197forward
CNT30421092Medicago truncatulaPapaver somniferum70.5139.3784.79263forward
CNT30570674Medicago truncatulaVitis vinifera72.9228.8183.46272forward

Expression of CNT30144140

Peptides detected in this lncRNA

>peptide 1 (73 aa)
DVVNNIRTVWTRIGTMAPLSLKYSIVTWVFPSGLNQGHVPFLRTSVSLAPNLVARTWVKGISSGVSSVAYPNM*

>peptide 2 (41 aa)
MDTDRNHGALVIEILNSDLGLSIRSQPRACSVLANFSELSS*

>peptide 3 (30 aa)
MAMNTLSNIRTLLFNVDKDFAVVSIKTNII*

Sequence

>CNT30144140
GATGTCGTTAATAATATAAGGACAGTATGGACACGGATCGGAACCATGGCGCCCTTGTCATTGAAATACTCAATAGTGACTTGGGTCTTTCCATCAGGTC
TCAACCAAGGGCATGTTCCGTTCTTGCGAACTTCAGTGAGCTTAGCTCCTAACTTGGTTGCAAGAACATGGGTTAAAGGCATAAGCTCGGGTGTTTCATC
GGTAGCATACCCGAACATGTGACCTTGATCACCAGCACCAATTTCCTCAGGTCTTTTTGTAAGATGGCCATGAACACCTTGAGCAATATCAGGACTCTGT
TGTTCAATGTTGACAAGGACTTTGCAGTTGTCAGCATCAAGACCAACATCATCTGAAACAAAACCTATGTTCC