Detailed information on CNT30673003


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 1e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30144140Setaria viridisMedicago truncatula40.846.3880.35173forward

Expression of CNT30673003

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFTSTLQWSASSPTSADTKPMLRQVSLTIFS

>peptide 2 (43 aa)
MHTLSNIRGLLLNVHEHLAVVSVKPDICRHETDVAASVPDNLLV

>peptide 3 (42 aa)
STIQMIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 4 (34 aa)
YNTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

Sequence

>CNT30673003
AGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGC
GCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGG
GGCATCAGCTCAGGGGTCTCATCAGTTGCATACCCAAACATGTGTCCCTGGTCACCAGCTCCGATCTCCTCAGGGCGCTTTGTGAAGTGGCCATGCACAC
CCTGAGCAATATCAGGGGACTGCTGCTCAATGTTCACGAGCACCTTGCAGTGGTCAGCGTCAAGCCCGACATCTGCCGACACGAAACCGATGTTGCGGCA
AGTGTCCCTGACAATCTTCTCGTA