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Detailed information on CNT30583892


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DZE0|PAL2_ORYSJ, E-value = 3e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Echinochloa crusgalliOryza sativa30.5120.5783.89180forward
CNT30178786Echinochloa crusgalliSecale cereale33.5629.2583.84198forward
CNT30459402Echinochloa crusgalliSaccharum spontaneum41.0248.9989.67242forward
CNT30139541Echinochloa crusgalliLolium perenne36.9521.6182.11218forward
CNT30100429Echinochloa crusgalliOryza rufipogon47.2920.5886.74279forward
CNT30576230Echinochloa crusgalliOryza barthii16.135.7184.2195forward
CNT30592972Echinochloa crusgalliEragrostis curvula19.1531.1393.81113forward

Expression of CNT30583892

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MIFKCSVLSPLYFLLFFCIIPCLLSSCGQLSRAAGARRSTP*

>peptide 2 (45 aa)
VEQNNLLYPQLIHVKNSKSSEAAGAQDMHIAGHGVAASGTQTTFT*

>peptide 3 (49 aa)
MLKTAKVQKLRVPRTCTLQAMASQHQEHKRHSHELYSYKGTVNIEIVIS*

>peptide 4 (82 aa)
MLCIEPPILFAFLLYNTLSPLLLRAAQQSGRGSPFHSLRHSSSGSMCLPWLMATSTLLSSSPGDRVFSPVRYTVPTSSRTNR*

Sequence

>CNT30583892
TTGTAGAACAAAATAATTTACTTTACCCCCAACTTATACATGTTAAAAACAGCAAAAGTTCAGAAGCTGCGGGTGCCCAGGACATGCACATTGCAGGCCA
TGGCGTCGCAGCATCAGGAACACAAACGACATTCACATGAACTTTATAGCTACAAGGGAACGGTAAATATAGAGATTGTCATCAGCTAGACTGGCTGTAA
AACTTCACAATGATCTTCAAATGCTCTGTATTGAGCCCCCTATACTTTTTGCTTTTCTTCTGTATAATACCTTGTCTCCTCTCCTCTTGCGGGCAGCTCA
GCAGAGCGGCAGGGGCTCGCCGTTCCACTCCTTGAGGCACTCGAGCAGCGGGTCGATGTGCTTGCCCTGGTTGATGGCGACGAGCACCTTGTTGAGCTCC
TCACCAGGTGACCGTGTCTTCTCGCCAGTCAGGTACACGGTGCCGACCTCCTCGCGGACGAACCGGTAGAGCGGGTACGAGCGGCACTCGGTGATCCTGT
TCGGTATCGCCGCCGTGCCGTTCTCAACCGCCACCCGTGCCACCTCCACCGCCTTGGGCAGCGCCGCGCGGAGCTCCTCCTCGAACCGGG