Detailed information on CNT30132148


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 5e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Lolium perenneSetaria viridis19.1136.6292.4171forward
CNT30520579Lolium perenneSetaria italica40.2234.0390360forward
CNT30243592Lolium perenneAvena sativa53.1861.5895.38476forward
CNT3013298Lolium perenneZea mays53.0755.0490.11475forward
CNT30362471Lolium perenneSorghum bicolor17.9936.4393.79161forward
CNT30580821Lolium perenneEchinochloa crusgalli66.5974.5989.26596forward
CNT30496441Lolium perenneDigitaria exilis48.1653.0188.63431forward
CNT30604338Lolium perenneOryza punctata39.5552.3791.24354forward
CNT30556476Lolium perennePanicum hallii41.951.7290.4375forward

Expression of CNT30132148

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MDEVGVPEVVEAAVGEDLRAGLEPDGLLELDAHPLLEHLGEDAAERAEHGPPAVDDLERPVPGEGLRVGG*

>peptide 2 (34 aa)
MRDRTKKSLRFLNSENNSRDHCLQFACMTLDKQE*

>peptide 3 (31 aa)
MRNPSTRPMSRTWKPSTARMLCAWTRLGFPR*

>peptide 4 (29 aa)
MAHRPWMTSSALFLAKASGSADSPAVSQP*

Sequence

>CNT30132148
GTATGCATTTTGCTGAATTTCACATCCAGTTCTTCTCATCAGTTATTACACGTCTCCATACTTGATACAATGCACGCATAGCCAACAAGAATCAGCTAAG
CACACCATATAGTAAGTTGACAGACATGAGAGATCGAACCAAAAAATCCTTGAGATTTCTGAATTCTGAGAACAATTCAAGAGACCATTGTTTGCAATTT
GCGTGCATGACACTCGACAAACAAGAGTAGTTTACACTTTACAAGCGGCGGGGCGCCGTGCTGCGTCGACCGGTCCACGACTTAAGAGCCAGGAGCGAAC
TTGGTGGCGAAAACCCAGGCATTGTTGGCGACAGGGTCGTCGAGGTGGTCGAAGAGGTTCTCCAACGGGCCCTTGCCGGTGACGATGGCTTGCACGAAAA
ACCCAAACATGGAGAACATGGCGAGGCCGAGGGGGTCGAAGTACTGGCCGCCGGGGTAGAGGTCGTTGCCCTCGCCAACGCCGTCGAGGCCGTTGATGCG
GAATCCCTCGACGAGGCCCATGAGCAGGACCTGGAAGCCGAGCACGGCGAGGATGCTCTGCGCATGGACGAGGTTGGGGTTCCCGAGGTAGTCGAGGCCG
CCGTCGGAGAAGATCTGCGAGCCGGCCTTGAACCAGACGGGCTCCTTGAACTCGACGCCCACCCACTTCTGGAGCACCTCGGGGAAGACGCAGCCGAGCG
CGCCGAGCATGGCCCACCGGCCGTGGATGACCTCGAGCGCCCTGTTCCTGGCGAAGGCCTCCGGGTCGGCGGATAGCCCGGCGGTGTCCCAGCCGTAGTC
GCCGGGGAACTCGCCGTTGAGGTACGACGGCGTCTGCGCGGAGAAAGGGCCCAGGTACTTGACGCGATCCGGGCCGTACCACAAGTCGTTGCCCT