CANTATAdb - search

Detailed information on CNT30556476

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 2e-121

BLAST vs NONCODE:
NONBNAT003428, E-value = 2e-16

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30454234	Panicum hallii	Saccharum spontaneum	49.38	48.38	96.65	358	forward
CNT30132148	Panicum hallii	Lolium perenne	51.72	41.9	90.4	375	forward

Expression of CNT30556476

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MACTKNPNMENMASSAKVTGSSARPRGSKYWPPG*

>peptide 2 (32 aa)
INCTISVSRAHKSQLTESIMQTPKLLQYNPES*

>peptide 3 (34 aa)
MHPSAPSIAHRPWITSSALLRANASGSAESPAVSQ

>peptide 4 (31 aa)
MRKPSTRPMRMTWNPSTARMLCACTRLGLPR*

>peptide 5 (29 aa)
KLHNIGFKSTQVTTDREHNANPKTPTVQS*

Sequence

>CNT30556476
ATAAATTGCACAATATCGGTTTCAAGAGCACACAAGTCACAACTGACAGAGAGCATAATGCAAACCCCAAAACTCCTACAGTACAATCCTGAATCGTGAG
ATGGCAATATTTGCATTCATTGGTGGTGGTACAATCGAGTAGTCTACAATGGTGGTCCGGCACGAAGAGGCCGCCGTCTAGCTTAAGACCCGGGCGCGAA
CTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAG
AATCCGAACATGGAGAACATGGCGAGCTCGGCGAAGGTGACGGGGTCGTCGGCGAGGCCCAGGGGGTCGAAGTACTGGCCGCCGGGGTAGAGGTTGTTGC
CCTCGCCGACGCCGTCGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAATCCGAGCACGGCGAGGATGCTCTGCGCGTGCAC
CAGGTTGGGGTTGCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCAGACGGGCTCCTTGAAGTCCACGCGCACCCACTTC
TCGAGCACCTCCGGGGTGATGCATCCCAGCGCGCCCAGCATCGCCCACCGCCCGTGGATCACCTCCAGCGCCCTGTTGCGCGCGAACGCCTCCGGGTCGG
CGGAGAGCCCGGCCGTGTCCCAGCC