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Detailed information on CNT30580821


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 2e-141

BLAST vs NONCODE:
NONBNAT003428, E-value = 4e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30132148Echinochloa crusgalliLolium perenne74.5966.5989.26596forward

Expression of CNT30580821

Peptides detected in this lncRNA

>peptide 1 (45 aa)
AYYKPKNSSSTFLNPENTIFAFIGGGGTNVMSQTSSLQWWHKEAV*

>peptide 2 (31 aa)
MRKPSTRPMRMTWKPSTARMLCACTRFGLPR*

>peptide 3 (36 aa)
MQPSAPSMAQRPWITSRALFRANASGSAESPAVSQP*

Sequence

>CNT30580821
GAGCATACTACAAACCCAAAAACTCCTCCAGTACATTCCTGAATCCTGAGAACACGATATTTGCATTCATTGGTGGTGGTGGTACAAATGTGATGTCACA
AACGAGTAGTCTACAATGGTGGCACAAAGAAGCCGTCTAGCTTAAGACCCTGGCGTGAACTTGGTGGCGTAGACCCATGCGTTGTTGGCGACGGGGTCAT
CAAGGTGGTCGAGCAGGTTCTCGAGTGGGCCCTTGCCGGTGACAATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCCCAATGGGTCGAA
GTACTGGCCGCCGGGGTAGAGGTTGTTGCCCTCGCCGACGCCGTCGAGCCCGTTGATGCGGAAGCCCTCGACAAGGCCCATGAGGATGACCTGGAAGCCC
AGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTTGGGTTGCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGG
GCTCCTTGAAGTCCACGCGCACCCACTTCTCCAGCACCTCCGGGGTGATGCAGCCCAGCGCGCCCAGCATGGCCCAACGCCCGTGGATCACCTCCAGGGC
CCTGTTCCGGGCGAACGCCTCCGGGTCCGCGGAGAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTACGAGGGCGTCTGCGCC
GAGAAGGGGCCCAGGTACTTGACGCGGTCCGGGCCGTACCACAGGTCGTTGCTCTGCAAATGAAACGCCGCGACTTGTTGGTTAGCAAGCACTACGCTC