Detailed information on CNT30101408


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000791, E-value = 7e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691367Oryza rufipogonOryza sativa68.3515.9491.36324forward
CNT30553432Oryza rufipogonOryza glaberrima96.6294.8297.38458forward
CNT30596270Oryza rufipogonOryza meridionalis35.6530.5192.31169forward
CNT30370007Oryza rufipogonOryza glumipatula44.7398.1598.11212forward
CNT30105143Oryza rufipogonOryza longistaminata44.735.0392.45212forward
CNT30576216Oryza rufipogonOryza barthii95.78100.2297.36454forward
CNT30116422Oryza rufipogonOryza nivara98.5298.7397.64467forward
CNT30604371Oryza rufipogonOryza punctata50.2131.6184.03238forward

Expression of CNT30101408

Peptides detected in this lncRNA

>peptide 1 (62 aa)
QKSPLHFSSLFPQYHERARGVSVKFDNRQSRHRLRIIIGCIISESADGSYQVANSRIPAIFG*

Sequence

>CNT30101408
CAGAAATCTCCCCTCCATTTCTCCTCCCTTTTTCCACAGTATCACGAGAGAGCAAGAGGAGTCTCAGTGAAATTTGATAATCGGCAAAGTCGTCATCGGC
TTAGAATCATTATCGGCTGCATCATCTCGGAATCGGCCGATGGGAGTTATCAAGTCGCCAATAGTCGGATTCCTGCTATATTCGGTTAAGGAAATCAATC
TACTAAAGGAAACTTATCCCTAAGTGACTGAGTTTAAAGAGGATGTGGCATGTCAGTTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTT
TAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAGGGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGG
TATAAATATGTACACCCGAGGTCATTGTAATCTATCTTCACGATCAATATAATTCGGCGCATCGCCACCATTTT