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Detailed information on CNT30596270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692674Oryza meridionalisOryza sativa29.0614.0293.79161forward
CNT30553432Oryza meridionalisOryza glaberrima30.5134.9990.53169forward
CNT30370052Oryza meridionalisOryza glumipatula67.1514.4985.22372reverse complement
CNT30105143Oryza meridionalisOryza longistaminata57.227.5288.96317forward
CNT30101408Oryza meridionalisOryza rufipogon30.5135.6592.31169forward
CNT30576216Oryza meridionalisOryza barthii30.5137.3190.53169forward
CNT30116422Oryza meridionalisOryza nivara27.9832.7793.55155forward
CNT30604371Oryza meridionalisOryza punctata44.2232.5485.71245forward

Expression of CNT30596270

Peptides detected in this lncRNA

>peptide 1 (52 aa)
TPSRGGSMLSNDDNAKTRGIYSRGCAAETLRASTVDLDSFLLLFLLLHLQFP*

>peptide 2 (30 aa)
MESADGSRQIASNCIFDGVRSTKGNLSRRV*

>peptide 3 (39 aa)
MGVVKSPATVFSMESDQLKGIYPEESEFNKDAIWQFIYY*

Sequence

>CNT30596270
CAACCCCATCCCGCGGCGGTAGCATGTTGAGCAACGACGACAATGCCAAGACACGCGGCATTTACTCTAGGGGCTGTGCGGCAGAGACCCTACGGGCGTC
GACGGTAGACCTAGATTCATTTCTTCTTCTTTTTCTTCTTCTTCATCTACAGTTTCCATAACAAGCTACTGGAGAAAGGACATTGTTAACGACGAAATTT
GGTAAGCCCAAAGTCATCATTGGCTTAGAGTCAGTATCAGCTTCAGAGTTATGGAATCAGCCGATGGGAGTCGTCAAATCGCCAGCAACTGTATTTTCGA
TGGAGTCCGATCAACTAAAGGGAATTTATCCAGAAGAGTCTGAGTTCAATAAGGATGCGATATGGCAGTTTATCTATTATTAATTAGGAATAGTTTGATT
AGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCGATAAGGACTTTATGTTTTCCTTTTATCTTTAGAAAAGTTTCTTTCTTATCCGACAAGGACT
AGTATCTCCCCATGGGTATAAATATGTACACCAAGGGTCATTGTAAATTATCTC