Detailed information on CNT30576216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000791, E-value = 4e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691367Oryza barthiiOryza sativa71.7415.9992325forward
CNT30553432Oryza barthiiOryza glaberrima98.0191.93100444forward
CNT30596270Oryza barthiiOryza meridionalis37.3130.5190.53169forward
CNT30370007Oryza barthiiOryza glumipatula46.898.1599.53212forward
CNT30105143Oryza barthiiOryza longistaminata49.675.3490.22225forward
CNT30101408Oryza barthiiOryza rufipogon100.2295.7897.36454forward
CNT30116422Oryza barthiiOryza nivara100.2295.9896.04454forward
CNT30604371Oryza barthiiOryza punctata51.2130.8184.48232forward

Expression of CNT30576216

Peptides detected in this lncRNA

>peptide 1 (57 aa)
HFSSLFPQYHERARGVSVKFDNRQRRHRLRIIIGCIISESADGSYQVANSRIPAIFG*

Sequence

>CNT30576216
TCCATTTCTCCTCCCTTTTTCCACAGTATCACGAGAGAGCAAGAGGAGTCTCAGTGAAATTTGATAATCGGCAAAGACGTCATCGGCTTAGAATCATTAT
CGGCTGCATCATCTCGGAATCAGCCGATGGGAGTTATCAAGTCGCCAATAGTCGGATTCCTGCTATATTCGGTTAAGGAAATCAATCTACTAAAGGAAGC
TTATCCCTAAGTGCTGAGTTTAAAGAGGATGCGGCATGTCAGTTTATCTATTAATTAGGAATAGTTTGTTAGTTTTCTTTTATCTTTAGAAAAGTGTGTT
TAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAGATTTATTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACA
CTCGGGGTCATTGTAATCTATCTTCACGATCAATATAATTCGGCGCATCGCCA