Detailed information on CNT30553432


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004543, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691367Oryza glaberrimaOryza sativa67.0815.9491.98324forward
CNT30596270Oryza glaberrimaOryza meridionalis34.9930.5190.53169forward
CNT30370007Oryza glaberrimaOryza glumipatula43.8998.1599.53212forward
CNT30105143Oryza glaberrimaOryza longistaminata44.725.1289.81216forward
CNT30101408Oryza glaberrimaOryza rufipogon94.8296.6297.38458forward
CNT30576216Oryza glaberrimaOryza barthii91.9398.01100444forward
CNT30116422Oryza glaberrimaOryza nivara96.2798.3196.13465forward

Expression of CNT30553432

Peptides detected in this lncRNA

>peptide 1 (31 aa)
GGXRIRRRIRNLPSISPPFFHSITREQEESQ*

>peptide 2 (33 aa)
GGXGSGAESEISPPFLLPFSTVSRESKRSLSEI*

>peptide 3 (70 aa)
GXPDQAPNQKSPLHFSSLFPQYHERARGVSVKFDNRQRRHRLRIIIGCIISESADGSYQVANSRIPAIFG*

Sequence

>CNT30553432
GGGGGGANCCGGATCAGGCGCCGAATCAGAAATCTCCCCTCCATTTCTCCTCCCTTTTTCCACAGTATCACGAGAGAGCAAGAGGAGTCTCAGTGAAATT
TGATAATCGGCAAAGACGTCATCGGCTTAGAATCATTATCGGCTGCATCATCTCGGAATCAGCCGATGGGAGTTATCAAGTCGCCAATAGTCGGATTCCT
GCTATATTCGGTTAAGGAAATCAATCTACTAAAGGAAGCTTATCCCTAAGTGCTGAGTTTAAAGAGGATGCGGCATGTCAGTTTATCTATTAATTAGGAA
TAGTTTGTTAGTTTTCTTTTATCTTTAGAAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAGATTTATTTCTTGTCCG
ACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACTCGGGGTCATTGTAATCTATCTTCACGATCAATATAATTCGGC