Detailed information on CNT30370007


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691367Oryza glumipatulaOryza sativa39.354.1890.5985forward
CNT30553432Oryza glumipatulaOryza glaberrima98.1543.8999.53212forward
CNT30108035Oryza glumipatulaOryza longistaminata50.9333.5495.45110reverse complement
CNT30101408Oryza glumipatulaOryza rufipogon98.1544.7398.11212forward
CNT30576216Oryza glumipatulaOryza barthii98.1546.899.53212forward
CNT30116422Oryza glumipatulaOryza nivara98.1544.8296.23212forward

Expression of CNT30370007

Peptides detected in this lncRNA

>peptide 1 (58 aa)
PHFSSLFPQYHERARGVSVKFDNLQRRHRLRIIIGCIISESADGSYQVANSRIPAIFG*

Sequence

>CNT30370007
CCCCCCATTTCTCCTCCCTTTTTCCACAGTATCACGAGAGAGCAAGAGGAGTCTCAGTGAAATTTGATAATCTGCAAAGACGTCATCGGCTTAGAATCAT
TATCGGCTGCATCATCTCGGAATCAGCCGATGGGAGTTATCAAGTCGCCAATAGTCGGATTCCTGCTATATTCGGTTAAGGAAATCAATCTACTAAAGGA
AGCTTATCCCTAAGTG