Detailed information on CNT30604371


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692674Oryza punctataOryza sativa32.421.2587.3244forward
CNT30552988Oryza punctataOryza glaberrima33.076.2483.94249forward
CNT30596270Oryza punctataOryza meridionalis32.5444.2285.71245forward
CNT30370052Oryza punctataOryza glumipatula30.158.8484.14227reverse complement
CNT30101408Oryza punctataOryza rufipogon31.6150.2184.03238forward
CNT30576216Oryza punctataOryza barthii30.8151.2184.48232forward
CNT30116422Oryza punctataOryza nivara31.6150.3283.61238forward

Expression of CNT30604371

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEEQAQTIRSIHSARWKIELQSCAICGAL*

>peptide 2 (91 aa)
ANNNKPRRRLSAWTECKERKKRERERTEKRIERARRWLGCRDRSFAVPRRRGIPFPFHIGCAAPSTPAVRRSRSRSRRRICASRLINILIF*

>peptide 3 (84 aa)
QIIISRGVVSRRGRSAKKERRERGRGRRRGSRGRGDGLAAAIGPSPCRVGEGSRSPSTSVAPPLPRRPFVGVGAGAGGESAPVG*

>peptide 4 (47 aa)
MAWLPRSVLRRAASARDPVPLPHRLRRPFHAGRSSESEPEPAANLRQ*

>peptide 5 (30 aa)
MGINMSTQGPCKLSPQINTSIFGASPPFYFR

Sequence

>CNT30604371
GCAAATAATAATAAGCCGAGGCGTCGTCTCTCGGCGTGGACGGAGTGCAAAGAAAGAAAGAAGAGAGAGAGGGAGAGGACGGAGAAGAGGATCGAGAGGG
CGAGGAGATGGCTTGGCTGCCGCGATCGGTCCTTCGCCGTGCCGCGTCGGCGAGGGATCCCGTTCCCCTTCCACATCGGTTGCGCCGCCCCTTCCACGCC
GGCCGTTCGTCGGAGTCGGAGCCGGAGCCGGCGGCGAATCTGCGCCAGTAGGTTGATCAATATATTAATTTTCTGAAATATATGGAAGAGCAGGCCCAAA
CCATTCGTAGCATCCATTCGGCACGCTGGAAGATAGAGTTGCAATCATGCGCAATTTGTGGAGCACTTTGATGGAATATCGGCTTCAGAGTCCTGGAATC
AGCCGATGGACATTATGAATCTCCAGCAGTTGTATTCTTAATAGATTCGGTTAACGAAATTAATCAATTAAAGGAAGTTTATCCAGAAGAGTCCGAGTTC
AAGGACGATGAGGCATGGCAATTTATCTGTTAATTAGGAAAAATTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCGATAAAGACTTCA
TGTTTTCCTTTTATCTTTAGGAAAATTTGTATCGTGTCCGATATGGACTAGTATCTGTTCATGGGTATAAATATGTCCACCCAGGGTCCCTGTAAATTAT
CTCCACAGATCAATACATCTATTTTTGGTGCATCGCCACCCTTTTACTTTCGA