Detailed information on CNT30116422


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004543, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691367Oryza nivaraOryza sativa68.515.9491.05324forward
CNT30553432Oryza nivaraOryza glaberrima98.3196.2796.13465forward
CNT30596270Oryza nivaraOryza meridionalis32.7727.9893.55155forward
CNT30370007Oryza nivaraOryza glumipatula44.8298.1596.23212forward
CNT30105143Oryza nivaraOryza longistaminata47.575.3490.67225forward
CNT30101408Oryza nivaraOryza rufipogon98.7398.5297.64467forward
CNT30576216Oryza nivaraOryza barthii95.98100.2296.04454forward
CNT30604371Oryza nivaraOryza punctata50.3231.6183.61238forward

Expression of CNT30116422

Peptides detected in this lncRNA

>peptide 1 (75 aa)
PNQKSPLHFSSLFPQYHKRARGVSVKFDNRQNVICLESLSAASSRNRPMGVIKSPIVGFLLYSVKKINLLKKAYP*

Sequence

>CNT30116422
GCCGAATCAGAAATCTCCCCTCCATTTCTCCTCCCTTTTTCCACAGTATCACAAGAGAGCAAGAGGAGTCTCAGTGAAATTTGATAATCGGCAAAATGTC
ATCTGCTTAGAATCATTATCGGCTGCATCATCTCGGAATCGGCCGATGGGAGTTATCAAGTCGCCAATAGTCGGATTCCTGCTATATTCGGTTAAGAAAA
TCAATCTACTAAAGAAAGCTTATCCCTAAGTGACTGAGTTTAAAGAGGATGCGGCATGTCAGTTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTT
TATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAGAGTTTCTTCCTTGTCCGACAAGGACTTGTATCAACC
CATGGGTATAAATATGTACACCCGAGGTTATTGTAATCTATCTTCACGATCAATATAATTCGGCGCATCGCCA