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Detailed information on CNT3099067


BLAST search results

BLAST vs Swiss-Prot:
sp|P33626|TBA4_MAIZE, E-value = 8e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522084Solanum tuberosumSetaria italica5.8426.2386.2580reverse complement
CNT30317463Solanum tuberosumCorylus avellana5.0425.0991.369reverse complement
CNT30562915Solanum tuberosumActinidia chinensis7.1642.9887.7698reverse complement
CNT30553219Solanum tuberosumOryza glaberrima5.6237.3884.4277reverse complement
CNT30136398Solanum tuberosumLolium perenne5.9239.5183.9581reverse complement
CNT30720027Solanum tuberosumTriticum spelta5.5537.2585.5376reverse complement
CNT3040646Solanum tuberosumMarchantia polymorpha5.2623.2390.2872reverse complement

Expression of CNT3099067

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MINHGYLTMVYLTSVFFFLFLRPLDFFETQFC*

>peptide 2 (32 aa)
MRECISIHIGQAGIQVGNACWELYCLEHGIQE*

>peptide 3 (39 aa)
MSVYVIHNVVIIGDQRVFFEKNEPNTTFYEYIVMYYKYG*

Sequence

>CNT3099067
TTACGAGACATTGAATATGGTCCAATAATAATGTCTTAGCTGGCGTTAATTATAACCCCTCAATTTTTTCTACATTTAATATATAAACGTGTTATTTAAC
TGATATACACGTAGAACACACGTACTACTTGTTCAACTTTTTTCTATTTCAAATGATAAACCACGGTTATCTAACCATGGTTTATCTTACTTCAGTTTTT
TTTTTCTTATTTCTCCGGCCCCTAGATTTTTTCGAGACCCAATTCTGCTAGTCATATATAAACTGCTCTCAGTTTATGCAGATACCTAGATCTGAAATTT
TCAGGAAGGCGTCTTCATAAACGCCGTTTCCACTTTTCATTCTTTCTTCCAGATCTGAATTTGAATTTCATCGGAAAAAACTGCGAAAATGAGAGAATGC
ATTTCAATCCACATCGGACAGGCCGGAATTCAGGTCGGAAATGCATGCTGGGAGCTTTATTGCCTTGAACATGGCATTCAGGAATGAATCAGTCCTCTAT
GATGTTAGTATATGATATGTATTGGGTTGTTATCATAGGTTATTTCATAGAAGACTGAACTCTTTTTTGAAGGAATGAACAAGTCGTCTATGAAAACATG
TCGGTGTATGTTATACATAACGTGGTTATCATAGGCGACCAAAGAGTATTTTTTGAAAAGAATGAACCAAATACCACATTCTATGAATACATTGTAATGT
ATTACAAATACGGATAAAATATGTAGTCCATGATCTGGGGCACATGGTGTTAGGTGATCCATAATTTTGGACTAATGGTTTTTGTGCAAAGAGTGGTTTT
AAATTTTCTTTTTAACCTTTTACTAGTGTCCACAGTAAAAGGTGGTGGATAATTTTTAGATTTGGGTAAAACACACACAAATAAACCTTTGTTCTTCTCT
CTTTATTCTCTAGCAAGTTCCCGCCGCTGAACCACCACCCAAACATACCCAGAACCTCCCATCATTGTTGTTGTCATTTTGTTGACATCCTTATTTTTTT
AAAATAAAAAGCATTGCCGTGGAGCTCAAAAGAACAATTCAATTAATTTTATTTCTTTTAGAAAATTTAGGTTGAACAAACTCTCAAAGCTTTTTATATA
AGTATAATGTTGTATATGCAATATAAAATCACTCTTTGTACAAAATCATTTGCCAAAACCACGGGCACCTAAAACTGTGTGCTCAAAACCATGGGTTACG
TACCTTATCTGTATTTATAATATTTTATTTGCATTTCAATGTATTCATAGACTGCGCTAAAAATAAATATGAATATATTATAATAAATGTAACTAATGGC
ATGTAAAAAATGCAATCTAACAAAAAATGATGATTTAATAAAACTAAAACAATATTTCGTTTATTTTCA