Detailed information on CNT30720027


BLAST search results

BLAST vs Swiss-Prot:
sp|P14641|TBA2_MAIZE, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099067Triticum speltaSolanum tuberosum37.255.5585.5376reverse complement
CNT30562915Triticum speltaActinidia chinensis34.831.1491.5571forward
CNT30553219Triticum speltaOryza glaberrima41.1840.7897.6284forward
CNT30136398Triticum speltaLolium perenne45.144.8893.4892forward
CNT301559Triticum speltaZea mays38.247.5494.8778forward
CNT30704384Triticum speltaPrunus avium37.2513.6485.5376forward
CNT3040646Triticum speltaMarchantia polymorpha32.3521.2990.9166forward

Expression of CNT30720027

SRR9114152: 216.93 RPKM

Peptides detected in this lncRNA

>peptide 1 (66 aa)
GVMTTGEVVGCILLATDKLLRAIELPARVPDLDAGLADVDRDALPHGGGWGWLVGCAAGEMGKEEGE

>peptide 2 (34 aa)
MPAWPMWIEMHSLMAAGGGGWWAAPLAKWGRRRAK

Sequence

>CNT30720027
TGGTGTAATGACCACGGGCGAAGTTGTTGGCTGCATCCTCCTTGCCACTGATAAGCTGCTCAGGGCAATAGAGCTCCCAGCACGCGTTCCCGACCTGGAT
GCCGGCCTGGCCGATGTGGATCGAGATGCACTCCCTCATGGCGGCGGGTGGGGGTGGTTGGTGGGCTGCGCCGCTGGCGAAATGGGGAAGGAGGAGGGCG
AAGG