Detailed information on CNT3085640


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 2e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513666Vigna radiataJuglans regia36.6537.9484.62195forward
CNT30636619Vigna radiataCapsicum annuum47.5632.4881.42253forward
CNT30458863Vigna radiataSaccharum spontaneum51.6919.6978.18275forward
CNT30135152Vigna radiataLolium perenne26.521.7681.56141forward
CNT30622084Vigna radiataCajanus cajan48.534.7289.53258forward
CNT30154837Vigna radiataPrunus persica52.4430.2682.08279forward
CNT30120586Vigna radiataCitrus clementina42.4867.6684.96226forward
CNT3036222Vigna radiataCucumis melo32.5247.2782.66173forward
CNT30113854Vigna radiataFicus carica48.536.3979.46258forward

Expression of CNT3085640

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GVKPQYSLARNSVVTRFLPALVSNFSQYL*

>peptide 2 (31 aa)
MVIIQSLVACCKDTLGDSGTLVNVMRPINKDL

>peptide 3 (44 aa)
RSQTTILISKKFGCHPIPTRTSLELFSVLVVINMEALCGALSKL*

Sequence

>CNT3085640
AGGAGTCAAACCACAATACTCATTAGCAAGAAATTCGGTTGTCACCCGATTCCTACCCGCACTAGTCTCGAACTTTTCTCAGTACTTGTAGTTATCAACA
TGGAGGCTCTCTGCGGCGCCCTCAGCAAGCTTTGAATCACCCTTGTAGGTTCCAAGAGTTGCCTCTGAGTTAGCCTTGGCTCTTATCAATAAGGCTTCTT
GAGCCTTCTTCACATTCTCTTCTTTTCCACCCCATGCCTTAAGGGTACTCTGTTGAGGGTTGCCTCCTCCTCGCTCTGTCCACCAGACAAGAAAACTACA
GCAGGAACTGCAGCAGGTACAGTTCGCTGCAGGGCTCTAACAGTGTGTTCAGCAACCACTTCAGGAGCAACCTTTGCAGATTTAGATCCAGGTGTCACCA
TGTTTGGCTTCAATAGAGTTCCCTCAAGAAGAACATGGTGATCATTCAAAGCCTTGTAGCATGCTGCAAGGACACGCTCGGTGACAGCGGCACACTTGTG
AATGTCATGAGGCCCATCAACAAGGATCTCGG