Detailed information on CNT30709101


BLAST search results

BLAST vs Swiss-Prot:
sp|P09756|CB23_SOYBN, E-value = 5e-143

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514316Glycine maxJuglans regia53.4756.9584.84455forward
CNT30629263Glycine maxVigna unguiculata74.6261.7190.39635forward
CNT3046618Glycine maxPrunus dulcis58.0559.0984.41494forward
CNT30564070Glycine maxActinidia chinensis53.753.4585.34457forward
CNT3088186Glycine maxVigna radiata74.6258.2690.39635forward
CNT30146180Glycine maxMedicago truncatula59.3452.683.37505forward
CNT30623258Glycine maxDaucus carota58.7550.7184.4500forward
CNT30621493Glycine maxCajanus cajan59.4637.788.34506forward
CNT30153357Glycine maxPrunus persica59.4628.6584.39506forward

Expression of CNT30709101

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLTLPTSGADGPSFTALPAKDGEERAMEEAAAIFKTLG*

>peptide 2 (33 aa)
MLTCRGRSCSFTLSSAKASGSSARPNGSKLPPG*

>peptide 3 (29 aa)
MAHLEWITSSSRFLAKVSGSAESPAVSQP*

Sequence

>CNT30709101
GTTTTCGTAAAAAGCAAGTAACATTAAGTTGGATTCGGATACACAAGATAATTCACATTATCTGAAGTACATTGCAATAACATATACTTCACCAAACACA
AATCTAAAAACTCTCAAAAGTCCACAAGTCATCCTTTTCTTTCATGCTCACTTGCCGGGGACGAAGTTGTTCCTTCACCTTAAGCTCAGCAAAAGCCTCT
GGGTCATCAGCAAGGCCCAATGGGTCAAAGCTGCCACCAGGGTAGATTGGGTCAGTGACCTCACCGAGGGGCCCACCAGCAATACGATAACCCTCAACAG
CACCCATTAGGATAACTTGGGTGGCCCAGATGGCGAGGATGCTCTGGGCGTGGACAAGGCTTGGGTTGCCCAAGTAGTCCAGCCCACCCTCGCTGAAGAT
CTGGGACCCGGCCTTGAACCACACAGCTTCTCCAAACTTGACCCCGTTGCGGGACAATAGTTCGGGGAAGACGCAGCCCAAGGCCCCGAGCATGGCCCAC
CTGGAGTGGATCACTTCGAGCTCACGGTTTCTGGCGAAGGTTTCTGGGTCGGCCGAAAGCCCAGCAGTGTCCCAGCCGTAGTCACCTGGGAACTCGCCAG
TGAGGTAGGACGGGGGCTCGCCAGAGAATGGGCCCAAGTACTTGACGCGGTCTGGGCCGTACCATGGGCTTCCGGAGGAGGCCTGCTTGGTGACGGTCTT
CCTCATGCTGACCCTCCCGACTTCGGGGGCTGATGGGCCCAGCTTCACGGCCTTGCCAGCCAAGGATGGGGAAGAGAGAGCCATGGAGGAGGCTGCTGCC
ATTTTTAAAACTCTAGGATGAGCTTGCTTTCTGCCTTGTGTTATGGAGTTG