Detailed information on CNT30520701


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 9e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671718Setaria italicaSetaria viridis62.9677.0198.55345forward
CNT30288773Setaria italicaTriticum aestivum31.3965.6596.51172forward
CNT30555842Setaria italicaOryza glaberrima21.3533.7294.87117forward
CNT30437396Setaria italicaAegilops tauschii24.6435.6296.3135forward
CNT30657523Setaria italicaTriticum dicoccoides36.8623.9395.54202forward
CNT30126375Setaria italicaCorymbia citriodora23.9140.0682.44131forward
CNT30681359Setaria italicaTriticum urartu37.7728.7194.69207forward

Expression of CNT30520701

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRGIARSTQIANSNSSFGGEGLIKNTTKVH*

>peptide 2 (41 aa)
HWLQHSTSTRSRGMHRSTQAIESSQSIPSHKKEKVASTINL*

>peptide 3 (50 aa)
MTASMARRPFLISLVRSSLIFSGEPLPQPSGSNHRPPGRRRRVPWQRELVA

>peptide 4 (58 aa)
IGYNIVQVHDQEACIAPHKPLNHHSLFRPTKRKKSHRPSTYNNLHLMHAWYSTQHSDR*

>peptide 5 (91 aa)
MCSLIDSADLEDGGVAGVGEVGEEVVDGAGAGVLGLKPGAHDGEHGEAAVLDLLGAQLLDLLRRAAAPAERVKPQATREAETSAMAARACGA

Sequence

>CNT30520701
CATTGGTTACAACATAGTACAAGTACACGATCAAGAGGCATGCATCGCTCCACACAAGCCATTGAATCATCACAGTCTATTCCGTCCCACAAAAAGGAAA
AAGTCGCATCGACCATCAACCTATAACAATCTCCACCTCATGCATGCGTGGTATAGCACGCAGCACTCAGATCGCTAACTCCAACTCCTCATTTGGGGGT
GAAGGCCTGATCAAGAACACAACAAAAGTTCACTAATCAGTAACCAAACCGTACAGATCGAAGCTGTGAGGTATGTGCAGTTTGATCGATTCAGCTGACC
TGGAAGATGGTGGCGTGGCCGGGGTCGGCGAGGTGGGCGAAGAGGTTGTCGATGGGGCCGGTGCCGGTGTACTCGGCCTGAAACCAGGCGCCCATGACGG
CGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTTGATCTTCTCCGGCGAGCCGCTGCCCCAGCCGAGCGGGTCAAACCACAGGCC
ACCAGGGAGGCGGAGACGAGTGCCATGGCAGCGAGAGCTTGTGGCGCG