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Detailed information on CNT30676468


BLAST search results

BLAST vs Swiss-Prot:
sp|P09315|G3PA_MAIZE, E-value = 2e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523847Setaria viridisSetaria italica43.5446.4598.49465forward
CNT30379481Setaria viridisManihot esculenta8.6142.0183.792forward
CNT30221009Setaria viridisHordeum vulgare12.9224.2592.75138forward
CNT30385588Setaria viridisTriticum turgidum7.9630.3692.9485forward
CNT30436771Setaria viridisAegilops tauschii10.8621.2595.69116forward
CNT30244006Setaria viridisAvena sativa30.3479.4191.05324forward
CNT30133198Setaria viridisLolium perenne7.7735.7890.3683forward
CNT304088Setaria viridisZea mays2843.2791.64299forward
CNT30231796Setaria viridisAnanas comosus19.3854.9185.02207forward
CNT30680437Setaria viridisTriticum urartu18.2637.4391.28195forward
CNT30357405Setaria viridisLactuca sativa14.8922.7181.76159forward
CNT30572796Setaria viridisVitis vinifera11.4223.1185.25122forward

Expression of CNT30676468

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRGFTSNCWRQCQLGRRPSASSPTRCRTTR*

>peptide 2 (92 aa)
MTLTMSSPMTMVSEASTSTDTSGASQTSRMPASSLAALSRNAWFTSSARVFLETCTTRSTTETFGVGTMLSAAARARRRSRWLASSSLWSPV*

>peptide 3 (75 aa)
PEVDYTPSLDNEKSEKGERENKRNCWEFGSSISHYKLSSGKTLGKILKPRMGYYNARLHFQLLATMSARSTTLCE*

>peptide 4 (47 aa)
CRKSIILRPWTMKNRRREREKIKGIVGSLGPRFLITNYHQGRPWGKF*

>peptide 5 (85 aa)
MSPFPGAVMSTFLAPAWMCFPAPSRSTNTPVPSMTRSTPISPHGRLLGLRSDTTLMTLPSTEMALSPTGLTSASKMPSVESYLSR*

Sequence

>CNT30676468
TGCCGGAAGTCGATTATACTCCGTCCCTGGACAATGAAAAATCGGAGAAGGGAGAGAGAGAAAATAAAAGGAATTGTTGGGAGTTTGGGTCCTCGATTTC
TCATTACAAATTATCATCAGGGAAGACCCTGGGGAAAATTTTGAAGCCGAGGATGGGTTATTACAATGCGAGGCTTCACTTCCAATTGTTGGCGACAATG
TCAGCTAGGTCGACGACCCTCTGCGAGTAGCCCCACTCGTTGTCGTACCACGCGATGACCTTGACCATGTCGTCGCCCATGACCATGGTGAGCGAGGCGT
CGACGTCGACGGACACGAGCGGGGCGTCGCAGACCTCGAGGATGCCGGCGAGCTCGTTGGCGGCGCTGTCGCGGAACGCCTGGTTCACCTCCTCGGCGAG
GGTCTTCTTGGAGACCTGCACGACGAGGTCGACGACGGAGACGTTCGGGGTGGGCACGATGTTGAGCGCGGCGGCGCGGGCGCGGCGCAGGTCGCGGTGG
CTGGCGTCCAGCAGCCTCTGGTCACCGGTGTAGGAGTGGGTGGTGGCGTTGCTGATGATGGGCTCGTCGGGGTTGTACTGGTCGGCATTGACGCCGCAGA
CGTAGGTGGGGATGTCGCCCTTCCCTGGCGCCGTGATGAGCACCTTCTTGGCTCCCGCCTGGATGTGCTTCCCGGCGCCCTCGCGGTCGACGAACACCCC
CGTGCCCTCGATGACGAGGTCTACGCCCATCTCCCCCCACGGCAGGTTGCTGGGGTTGCGGTCGGACACGACCTTGATGACCTTGCCGTCGACGGAGATG
GCGTTGTCCCCCACGGGCTTAACGTCGGCGTCGAAGATGCCGAGCGTGGAGTCGTACTTGAGCAGGTGAGACGCCTGCTTGACGCCTCCCGTGTCGTTGA
TGGCGATGACCTCGAGCGGCGAGTCGTCGCGCCCGTGCCAGCAGCGGAGCTCCTGAGCCCGGAGAACTCGGACAGGCCGGCGCTCTGGAGCGGCGCGGTG
GTGGCGGAGAGCATGGGCGACGCCATGGTGGTGGCCACGGACCAGAGCAGGGGCGGGATCGATCAAGG