Detailed information on CNT30523847


BLAST search results

BLAST vs Swiss-Prot:
sp|P09315|G3PA_MAIZE, E-value = 6e-120

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676468Setaria italicaSetaria viridis46.4543.5498.49465forward
CNT30379481Setaria italicaManihot esculenta9.1942.0183.792forward
CNT30628639Setaria italicaVigna unguiculata21.1829.8281.13212forward
CNT30221009Setaria italicaHordeum vulgare13.7924.2592.75138forward
CNT30133198Setaria italicaLolium perenne15.2865.9592.81153forward
CNT304088Setaria italicaZea mays29.6742.9893.27297forward
CNT30231796Setaria italicaAnanas comosus27.0771.8886.72271forward
CNT30680437Setaria italicaTriticum urartu25.6749.3391.44257forward
CNT30357405Setaria italicaLactuca sativa15.8822.7181.76159forward

Expression of CNT30523847

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MSPFPGAVMSTFLAPAWMCFPAPSRSTNTPVPSMTRSTPISPHGRLLGLRSDTTLMTLPSTEMALSPTGLTSASKMPSVESYLSR*

>peptide 2 (94 aa)
LATDSIYYKSALYSVCDFLCRKSIILRPWTMKNRRRERENKRNCWEFGSSISHYKLSSGKTLGKILKPRMGYYNARLHFQLLATMSARSTTLCE*

>peptide 3 (30 aa)
MRGFTSNCWRQCQLGRRPSASSPTRCRTTR*

>peptide 4 (60 aa)
MTLTMSSPMTMVSEASTVEDTSEHLKSTDTSGASQTSRMPASSLAALSRWLASSSLWSPV*

>peptide 5 (44 aa)
MAMTSSGESSRPCQQRRKLRPMRPNPLIATFSLASVGARLGPPLV

>peptide 6 (30 aa)
LQQIVYITNLHYTASAISFAGSRLYSVPGQ*

Sequence

>CNT30523847
CTTGCAACAGATAGTATATATTACAAATCTGCATTATACAGCGTCTGCGATTTCCTTTGCCGGAAGTCGATTATACTCCGTCCCTGGACAATGAAAAATC
GGAGAAGGGAGAGAGAAAATAAAAGGAATTGTTGGGAGTTTGGGTCCTCGATTTCTCATTACAAATTATCATCAGGGAAGACCCTGGGGAAAATTTTGAA
GCCGAGGATGGGTTATTACAATGCGAGGCTTCACTTCCAATTGTTGGCGACAATGTCAGCTAGGTCGACGACCCTCTGCGAGTAGCCCCACTCGTTGTCG
TACCACGCGATGACCTTGACCATGTCGTCGCCCATGACCATGGTGAGCGAGGCGTCGACGGTGGAGGACACGTCGGAGCACCTGAAGTCGACGGACACGA
GCGGGGCGTCGCAGACCTCGAGGATGCCGGCGAGCTCGTTGGCGGCGCTGTCGCGGTGGCTGGCGTCCAGCAGCCTCTGGTCACCGGTGTAGGAGTGGGT
GGTGGTCATGGCGTTGCTGATGATGGGCTCGTCGGGGTTGTACTGGTCAGCATTGACGCCGCAGACGTAGGTGGGGATGTCGCCCTTCCCTGGCGCCGTG
ATGAGCACCTTCTTGGCTCCCGCCTGGATGTGCTTCCCGGCGCCCTCGCGGTCGACGAACACCCCCGTGCCCTCGATGACGAGGTCTACGCCCATCTCCC
CCCACGGCAGGTTGCTGGGGTTGCGGTCGGACACGACCTTGATGACCTTGCCGTCGACGGAGATGGCGTTGTCCCCCACGGGCTTAACGTCGGCGTCGAA
GATGCCGAGCGTGGAGTCGTACTTGAGCAGGTGAGACGCCTGCTTGACGCCTCCCGTGTCGTTGATGGCGATGACCTCGAGCGGCGAGTCGTCGCGCCCG
TGCCAGCAGCGGAGGAAGTTGCGCCCGATGCGGCCGAACCCGTTGATCGCCACCTTCAGCTTGGCCTCCGTCGGCGCCCGCCTAGGCCCGCCACTCGTGC
C