Detailed information on CNT30357405


BLAST search results

BLAST vs Swiss-Prot:
sp|P19866|G3PA_SPIOL, E-value = 2e-62

BLAST vs NONCODE:
NONMTRT001777, E-value = 9e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676468Lactuca sativaSetaria viridis22.7114.8981.76159forward
CNT30523847Lactuca sativaSetaria italica22.7115.8881.76159forward
CNT3093146Lactuca sativaSolanum tuberosum14.4329.1983.17101forward
CNT302683Lactuca sativaZea mays14.1424.583.8499forward

Expression of CNT30357405

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVTIKRLNERIERLTPSYLQQCQPNPPPFASNPIRYRTMQSPSPCHLP*

>peptide 2 (51 aa)
MKGSRGSLPVICNNVSQIHHPLRVTPFVIVPCNHLHHVISHNHGQRRVNSR*

>peptide 3 (70 aa)
MLGRCSVLQLLHVGGVAAGNDFDDLAVNGNGVVAGRFDFSAKDAESGIVLEKVGCLFDTAGVVNGDDIQR*

>peptide 4 (59 aa)
MSSPITMVNDESTVDDTSLHLKSTDTRGSSHTARIPANSLSAASLNAALTSSAKVFLET*

>peptide 5 (65 aa)
MILPSTEMALSPEGLTSAPKMPRVESYLRRWDACLTPPVSLMAMTSRGESFLPCQHLKKFLPIRPN

Sequence

>CNT30357405
TTGAAAAGAAATGGTAACAATTAAACGATTGAATGAAAGGATCGAGAGGCTCACTCCCAGTTATTTGCAACAATGTCAGCCAAATCCACCACCCTTTGCG
AGTAACCCCATTCGTTATCGTACCATGCAATCACCTTCACCATGTCATCTCCCATAACCATGGTCAACGACGAGTCAACAGTCGATGACACGTCGCTGCA
TCTAAAGTCAACAGACACCAGAGGCTCGTCGCACACCGCCAGAATACCAGCCAACTCATTGTCAGCAGCCTCCCTGAACGCCGCGTTGACCTCCTCAGCG
AAGGTCTTCTTGGAAACCTGAACCACCAAGTCCACGACGGAGACATTGGGTGTGGGCACACGGAGAGCAATACCGTTGAGCTTCCCTTTGAGTGACGGCA
ACACAAGCGCGACGGCCTTTGCTGCTCCGGTGGATGTTGGGACGATGTTCAGTGCTGCAGCTCTTGCACGTCGGAGGGGTTGCGGCTGGAAACGACTTTG
ATGATCTTGCCGTCAACGGAAATGGCGTTGTCGCCGGAAGGTTTGACTTCAGCGCCAAAGATGCCGAGAGTGGAATCGTACTTGAGAAGGTGGGATGCTT
GTTTGACACCGCCGGTGTCGTTAATGGCGATGACATCCAGAGGTGAATCCTTCCTTCCATGCCAACACCTCAAGAAATTCCTTCCGATACGCCCGAATCC