Detailed information on CNT30221009


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676468Hordeum vulgareSetaria viridis24.2512.9292.75138forward
CNT30523847Hordeum vulgareSetaria italica24.2513.7992.75138forward
CNT302683Hordeum vulgareZea mays17.752596.04101forward
CNT30215929Hordeum vulgareHelianthus annuus20.9112.6282.35119forward
CNT30681694Hordeum vulgareTriticum urartu19.8650.998.23113forward

Expression of CNT30221009

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MPISPHGRLEGLRSDTTLITLPSTEMALSPTGLTSASKMPSVESMGDAMSKGSDQIGGKIKDGEAGVAVYTS*

>peptide 2 (58 aa)
IYEYYRCTALRLPLQEAYYNPCLDTEKSEKEKRRKERKRKKVLGARYFEFSLQRIDHP*

>peptide 3 (34 aa)
MPLWGGVHFHWLATMSARQLVVHEALLMMVSAWV*

Sequence

>CNT30221009
GTATATACGAGTATTACAGATGCACAGCGTTGAGACTTCCTTTGCAGGAAGCCTATTATAATCCGTGTCTGGACACTGAAAAATCAGAGAAAGAGAAAAG
AAGAAAAGAAAGAAAAAGGAAGAAGGTGTTGGGAGCTCGATACTTTGAATTCTCATTACAAAGAATCGATCATCCGTGACGACGGCTGGGGAAAATTTCG
AGAGGAGTCACTTGACAGGGCAATGCCGCTGTGGGGGGGCGTTCACTTCCATTGGTTGGCGACGATGTCGGCGAGGCAGTTGGTGGTGCATGAGGCGTTG
CTGATGATGGTGTCGGCGTGGGTGTAGAGGTCGATGCCCATCTCGCCCCACGGCAGGTTGGAGGGGTTGCGGTCGGACACGACCTTGATCACCTTGCCGT
CGACGGAGATGGCGTTGTCGCCCACGGGCTTGACGTCCGCGTCGAAGATGCCCAGCGTGGAGTCCATGGGCGACGCCATGTCCAAAGGATCCGATCAGAT
AGGGGGGAAGATCAAGGACGGTGAGGCGGGCGTGGCTGTATATACGAGTTAGGGGATTGGAGCTTGTGG