« Back to Hordeum vulgare search


Detailed information on CNT30223286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675011Hordeum vulgareSetaria viridis13.2749.0792.38105forward
CNT30392434Hordeum vulgareTriticum turgidum23.2632.0685.87184forward
CNT30229845Hordeum vulgareAnanas comosus12.6424.5789100forward

Expression of CNT30223286

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MDHELAYVPVVDGGRVGLGAVEEVGAEALGGEVAPGVEDAPPHAAAARRRRRRRRRRPSPAEARPPRRPTACPASCRWI*

>peptide 2 (51 aa)
MASSQIEVVDRAPPSSSSLAVVAPGPGLVAVKPGHQTYARTLHRYYFHACC*

>peptide 3 (48 aa)
RLLLSYHSRLNIEKTTPPTRENLHMERTQSTHIHPSLASMRRAKSKLR*

Sequence

>CNT30223286
TGAGGCTGTTATTATCTTACCATAGTCGGTTAAACATTGAGAAGACCACACCACCCACACGAGAGAATTTACACATGGAGCGCACACAAAGTACACACAT
ACACCCATCACTCGCTAGCATGCGGCGAGCAAAGAGCAAACTGAGGTAACAAAAGAAAGTTACAAGCACTAGTATAGTAGTACTGCTACTAAGCTTAGGA
GAAACTACATGCAGCCTCGGACAGCAACGTACGTACGCAGGATTTAGATAACCAAAAGAGCAGCAAACATGGCGTCGTCCCAGATCGAAGTTGTCGATCG
AGCACCCCCGTCTTCCTCTTCTTTAGCGGTGGTTGCTCCTGGTCCTGGTCTCGTCGCTGTAAAGCCTGGACATCAAACGTACGCACGTACGTTGCACCGT
TATTATTTCCATGCATGCTGCTAACCCGTTCCAAGCCCCAGTAGACAGTGCTATCAAAAACCCATTTTATATTGCGAGATGGATCATGAGCTAGCGTACG
TACCAGTCGTAGACGGTGGGAGAGTTGGGCTGGGGGCGGTCGAAGAGGTTGGCGCCGAGGCCCTTGGTGGCGAGGTTGCTCCCGGGGTGGAAGACGCTCC
GCCACACGCTGCCGCCGCGCGGCGGCGTCGTCGACGACGACGACGGCGCCCGTCTCCGGCCGAGGCCCGGCCACCACGTCGTCCCACAGCTTGTCCAGCA
TCTTGTAGGTGGATCTGATCGGTGCAAGAACTTGTGTCACGTACTAGCTTGTAGAGTACTGCCACCACCGATAAGATCAAGTGCACTGGCC