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Detailed information on CNT30149572


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675011Brachypodium distachyonSetaria viridis15.8447.6693.14102forward
CNT30229845Brachypodium distachyonAnanas comosus15.2224.0889.898forward

Expression of CNT30149572

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLLVARLLPGWNTLRQTLLPRDDDGVTGVVDAGALVVAS*

>peptide 2 (51 aa)
MKRGALASAYGVPVINGGGVGLRAVEEVGADALGCQVAPRVEHAPPDVAAA*

>peptide 3 (45 aa)
ACSKNQKPPTSFHGLQACGALNSKLQTQELPVRFKKKNYKYCNCN*

Sequence

>CNT30149572
GCCTGTTCAAAAAATCAAAAGCCGCCAACGTCATTCCATGGTTTACAGGCCTGTGGTGCTTTGAATTCTAAACTACAAACACAGGAACTCCCTGTCCGTT
TCAAAAAAAAAAACTATAAATACTGCAATTGCAACTGATTTCATCGTAGATTCACTATCAAGCTTTCTTCAGCCCTGCCGTTTAATTTGCAGCGACAGGT
GACAGCGATATGCTCTGCTAGTACTAGTATCTAGATGAAGCAGAGGAATTTCATAATCGTAATATGAAGAGAGGAGCACTAGCGTCGGCGTACGGCGTAC
CAGTCATAAACGGTGGGGGTGTTGGGCTGCGGGCGGTCGAAGAGGTTGGCGCCGATGCTCTTGGTTGCCAGGTTGCTCCCCGGGTGGAACACGCTCCGCC
AGACGTTGCTGCCGCGTGACGACGACGGAGTCACCGGCGTGGTCGATGCAGGAGCTCTTGTTGTTGCTAGCTGAGCTGCTACCTTGGCAAAATATCAAGA
ACGCTGTCCGAGTAAACTAGCTGGAGAGCCTCTCTTAAATCATTGAGGGACGTGGGTGGGTTTACCGTCAGGTCGTGTGACCGCCCAGGATCACAGGCAA
CTGTACAAAAGAAAACCTGACAGATGCCAGTGCTACTAGGCACT