Detailed information on CNT30229845


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05349|12KD_FRAAN, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675011Ananas comosusSetaria viridis24.5746.7389100forward
CNT30639465Ananas comosusNymphaea colorata25.812.0183.81105forward
CNT30183720Ananas comosusSecale cereale24.5712.3388100forward
CNT30223286Ananas comosusHordeum vulgare24.5712.6489100forward
CNT30149572Ananas comosusBrachypodium distachyon24.0815.2289.898forward
CNT30111747Ananas comosusFicus carica20.6411.1783.3384forward

Expression of CNT30229845

Peptides detected in this lncRNA

>peptide 1 (44 aa)
VRSSGGVITIIYLSQHSSIHLNNNRHNNTHPHGDKLHMINMGSI*

Sequence

>CNT30229845
TAGTAAGAAGCAGTGGTGGTGTTATTACAATTATATATTTATCTCAACATAGTTCCATACATCTTAATAATAACCGACATAACAACACCCACCCCCATGG
AGATAAATTACACATGATCAACATGGGGTCCATCTAGAGGATGATTATGCTACTACACATGAGCAAAACGAAGAAGTCGTAGACGGTGGGGGTGTTGGGC
TGGGGCTTGTCGAAGAGGTTGGAGCCGAGGGTCTTGGTGGCGAGGTTGCTCCCCGGGTGGAACACGCTGCGCCAGACGTTCACCTTGTGCGGCGTCGACG
GCGTGTTTGGCGTCACAGGAGTCGTCGGCGTGGCCGGCATCGAGATCGACCTCTGGTAGCCCTTGCCTGCGCCGCCGCTGCTCTCTCCTTCGTCAACTTC
ATTCAAG