CANTATAdb - search

Detailed information on CNT30183720

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675011	Secale cereale	Setaria viridis	12.95	49.07	95.24	105	forward
CNT30295923	Secale cereale	Triticum aestivum	41.55	37.74	89.61	337	forward
CNT30392292	Secale cereale	Triticum turgidum	40.81	42.6	91.84	331	forward
CNT30229845	Secale cereale	Ananas comosus	12.33	24.57	88	100	forward
CNT30684067	Secale cereale	Triticum urartu	21.45	52.25	95.4	174	forward
CNT30361380	Secale cereale	Sorghum bicolor	5.67	20.63	97.83	46	forward

Expression of CNT30183720

Peptides detected in this lncRNA

>peptide 1 (29 aa)
ILSSVDRSASSFSCIVLLIVFLHKSGVIV*

>peptide 2 (50 aa)
MAASQKLLSTLSSSSADGSLLFSGGCSWSWSRRCKAWTSNVRGSVIISRR*

>peptide 3 (48 aa)
FYLLLTVLRLVFRALYCLLFSFINLVLLSKKNIPEKGKTCSEAVIILP*

Sequence

>CNT30183720
ATTTTATCTTCTGTTGACCGTTCTGCGTCTAGTTTTTCGTGCATTGTATTGCTTATTGTTTTCCTTCATAAATCTGGTGTTATTGTCTAAGAAAAATATA
CCAGAAAAAGGAAAAACTTGCTCTGAGGCTGTTATTATCTTACCATAGCAGGATTAGATAACCAAAAGAGCAGCAAACATGGCGGCGTCGCAGAAGTTGT
TGAGCACCCTGTCTTCTTCTTCGGCCGACGGCTCGCTCTTATTTAGCGGTGGTTGCTCCTGGTCCTGGTCTCGTCGCTGTAAAGCCTGGACATCAAACGT
ACGTGGCAGCGTTATTATTTCCCGGCGTTAAATATTGCCATGTTCGTCCGTTTCAAGTTCCCAGTAGATCGTGTTATTAAAACTGATTTTATACTGTGAG
ATATGTAGATCATGAGCTAGCGTACCAGTCGTAGACGGTGGGGGAGTTGGGCTGCGGGCGGTCGAAGAGGTTGGCGCCGAGGCTTTTGGTGGCCAGGTTG
CTCCCGGGGTGGAAAACGCTCCGCCACACGCTGCCGCCACGCGGCGGCGTCGACGACGACGACGGCGTCACCGGCGTGGTCGGGGTCGTCGGCATCGACT
GCGACTGCTTCATCGCCTCCCCTGCAGCTGCACCTCCACCAACATCCATGTAAACCGCCATCAGTTCATATAATAAACCCAAAAAATCAATCCTCCGGTT
AAACAGCAAAACTTCTTTTCAAGATCACCGGTACTTGACTGACCGCTAGTTCTTACGTCCTTCCTGGTAGTTTCAGGCCATGTCGGTACCTCTGGACTAA
CGTATACAAAC