Detailed information on CNT30672165


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696213Setaria viridisOryza sativa54.0323.3283.08201forward
CNT30554851Setaria viridisOryza glaberrima54.0318.2682.59201forward
CNT30344350Setaria viridisEragrostis tef90.8643.7887.87338forward
CNT30362884Setaria viridisSorghum bicolor89.5218.8383.78333forward
CNT30596811Setaria viridisOryza meridionalis54.0321.7882.59201forward
CNT30371038Setaria viridisOryza glumipatula54.0317.5983.08201forward
CNT30103395Setaria viridisOryza rufipogon54.0316.8583.08201forward
CNT30577705Setaria viridisOryza barthii54.0317.8382.59201forward
CNT30604579Setaria viridisOryza punctata54.0339.2681.09201forward

Expression of CNT30672165

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRSNCREETGNLSWLHRSLTVTEGKHCKQIIVS

>peptide 2 (44 aa)
MLAQHYWEQRLKCNLRSWSHRPTQSQKSHMSYCSGQRACLMQIS*

>peptide 3 (31 aa)
MVSSSHPKSEEPYELLLWSESMFDADLLVGT*

Sequence

>CNT30672165
CTCAATAAGCACCAGCTGCCATGAGCATCTCATCGAGATTGGGTGCGCCATTTCCCTGAGGCACAGCTAAACCATAGGTGTTCCTCATTCTCTTTGACAC
TTCACCTTGCAGGCACGCAGGATCGGCATATGCTGGCACAGCATTATTGGGAGCAAAGACTGAAGTGTAATCTGAGGTCATGGTCTCATCGTCCCACCCA
AAGTCAGAAGAGCCATATGAGTTACTGCTCTGGTCAGAGAGCATGTTTGATGCAGATCTCTTAGTGGGCACATGAGGTCTAACTGCAGGGAGGAAACTGG
CAATCTCAGCTGGCTTCACAGGAGCCTTACTGTCACTGAAGGCAAACATTGCAAACAAATCATTGTCTCCAT