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Detailed information on CNT30596811


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696213Oryza meridionalisOryza sativa84.5190.4999.23780forward
CNT30672165Oryza meridionalisSetaria viridis21.7854.0382.59201forward
CNT30555000Oryza meridionalisOryza glaberrima99.8978.6799.13922forward
CNT30363137Oryza meridionalisSorghum bicolor21.9944.0378.82203forward
CNT30371038Oryza meridionalisOryza glumipatula99.7880.5899.46921forward
CNT30103395Oryza meridionalisOryza rufipogon96.7574.8599.33893forward
CNT30577713Oryza meridionalisOryza barthii95.0274.299.09877forward

Expression of CNT30596811

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFISNVSVEARGLTGGMRSTGSAGFAGTFASIANKSLSELFS*

>peptide 2 (35 aa)
MSSSSRLQMPSLLAPSCVASFCRRLSIDSSELLST*

Sequence

>CNT30596811
ATTGTAGATACGCAATATGAGCACAACTATATAACTTAATAAGCACATTACAGCACACACATGGCCAAGGCAGTTATTTGAATCAGTCTCCAACATACTT
CAAATCATAGACCACACCATACAGCAAACATAGTATAAACATTGTCATAGAGAGTACAGCTGATAGCAGCATGTGATATTCTAGCATTACTTTGGTAGCA
TCCCTCTACAAAACATAGCAGACATCACCAGCTCTTCATCTTGGCCATACACATTCAACCTGACAAGAAAACCATATCCCATTTTACAACATATGTAATC
TGTACATGAAAATGTATCTACAAGAAATCAAAATAGTAGGTAGTGTGGAGTGCCTTACATGGTTTGCTAGTGACAGACCACACTGACCAGAACCTTTCGT
CTCCTCAGTAGGCACCGGCTGCCATGAGCAGCTCATCAAGGCTCCAGATGCCTTCGTTGCTTGCCCCGTCTTGTGTAGCATCATTTTGCAGAAGGTTGTC
CATTGATTCATCTGAGCTGCTCTCAACATAAGGTGGGCATGTTTTGTGCGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGATACCATAGTTGTTCCT
CATTCTCTTTGGTGCTCCACCTGTCAGGTAAGCAGGTTCACCATATGCTGGCATGGCAGCATTAGGAACGAAGACTGAAGTGTAGTCTGGGGTCAGGGTG
TCATCCTCCCAACCAAAGTCTGAAGAGCCAAATGAGTTGCTGCTCGTATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGAAGCAAGAGGTTTGACTG
GAGGCATGAGATCAACAGGCTCTGCCGGCTTTGCAGGCACCTTTGCAAGCATTGCAAACAAATCATTGTCTGAACTGTTTAGCTGAAAGAAAGCATCATC
GCCACAGGTCTTCAGAGGTGGAG