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Detailed information on CNT30344350

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K7E6|ERF1_ORYSJ, E-value = 4e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696213	Eragrostis tef	Oryza sativa	29.27	26.22	83.19	226	forward
CNT30672165	Eragrostis tef	Setaria viridis	43.78	90.86	87.87	338	forward
CNT30641255	Eragrostis tef	Nymphaea colorata	18.78	21.84	84.83	145	forward
CNT30554851	Eragrostis tef	Oryza glaberrima	41.71	29.25	83.85	322	forward
CNT30475741	Eragrostis tef	Saccharum spontaneum	18.78	27.83	84.14	145	forward
CNT30137863	Eragrostis tef	Lolium perenne	9.2	22.54	95.77	71	forward
CNT3015383	Eragrostis tef	Zea mays	7.77	20.2	86.67	60	reverse complement
CNT30686876	Eragrostis tef	Triticum urartu	17.75	32.54	87.59	137	forward
CNT30362884	Eragrostis tef	Sorghum bicolor	86.27	37.67	81.23	666	forward
CNT30596860	Eragrostis tef	Oryza meridionalis	41.71	36.59	84.47	322	forward
CNT30371074	Eragrostis tef	Oryza glumipatula	44.17	34.87	84.16	341	forward
CNT3038331	Eragrostis tef	Cucumis melo	14.38	21.94	82.88	111	forward
CNT30103368	Eragrostis tef	Oryza rufipogon	41.71	40.5	84.16	322	forward
CNT30577705	Eragrostis tef	Oryza barthii	41.71	28.57	83.85	322	forward
CNT30496193	Eragrostis tef	Digitaria exilis	29.53	67.26	81.14	228	forward
CNT30604579	Eragrostis tef	Oryza punctata	54.66	82.42	81.52	422	forward
CNT30551639	Eragrostis tef	Oryza brachyantha	18.39	34.63	92.25	142	forward

Expression of CNT30344350

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MVHLAGTQAQHMLARHYLEQILKCSLTSWSHRPTQSQKSHTSCCSGQRACSFQIPQWAQEASLEGGNQQFQLALMEPCCH*

>peptide 2 (34 aa)
LSISTSCQKQLIKAPEVPIACPILSNIVLQKAVH*

>peptide 3 (67 aa)
MVSSSHPKSEEPYELLLWSESMFVPNPSVGTRGFTGGRKPAVSAGFNGTLLSLKANIANKSLSPLVG*

Sequence

>CNT30344350
CTCTCTCAATAAGCACCAGCTGCCAAAAGCAGCTCATCAAGGCCCCAGAGGTCCCCATTGCTTGCCCCATCTTGAGTAACATCGTTTTGCAGAAGGCTGT
CCATTGATACTTCTGAGCTGCTCTCAACATAAGGCAATGGCAAATACTTCATCTCAGGAACGAAACCAGACATGTCTTGTGTGAGATTGGGCGCGCCATT
TCCCTGAGGCACAGCTACACCATAGTTGTTCCTCAGTCTCTTTGATGGTCCACCTTGCAGGCACGCAGGCTCAACATATGCTGGCACGGCATTATTTGGA
GCAAATACTGAAGTGTAGTCTGACGTCATGGTCTCATCGTCCCACCCAAAGTCAGAAGAGCCATACGAGTTGCTGCTCTGGTCAGAGAGCATGTTCGTTC
CAAATCCCTCAGTGGGCACAAGAGGCTTCACTGGAGGGAGGAAACCAGCAGTTTCAGCTGGCTTTAATGGAACCTTGTTGTCACTGAAGGCAAACATCGC
AAACAAGTCATTGTCTCCATTGGTTGGATGACCGAAGGCTTCATCAGCACAGTTCTTCAAAGGTTGAGTTAACTTTGTTGGGTCGGCAGCAGATGGCTTC
AGGATGGACTTCTGATCATTTGACACTTCATCAGGAAAGTTGACCTTCGCTTTCTTGCCACGGATCTTGCGGGCTTCAGCATCATACGCCCTAGCTGCTT
CCTCAGCAGTGTTGTAAGTTCCAAGCCAAACACGGACACCCTTGCTAGGGTCTCTGATTTCAGCAGCCCATT