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Detailed information on CNT30577705


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K7E6|ERF1_ORYSJ, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672165Oryza barthiiSetaria viridis17.8354.0382.59201forward
CNT30641255Oryza barthiiNymphaea colorata15.7126.6686.44177forward
CNT30539789Oryza barthiiBrassica napus16.1527.4180.22182forward
CNT30554851Oryza barthiiOryza glaberrima77.9979.84100879forward
CNT30475741Oryza barthiiSaccharum spontaneum16.9536.6680.1191forward
CNT30137863Oryza barthiiLolium perenne6.0321.5997.0668forward
CNT30232688Oryza barthiiAnanas comosus15.3551.3481.5173forward
CNT30686876Oryza barthiiTriticum urartu17.2146.0883.51194forward
CNT30344350Oryza barthiiEragrostis tef28.5741.7183.85322forward
CNT30362892Oryza barthiiSorghum bicolor19.3429.1190.83218forward
CNT30596860Oryza barthiiOryza meridionalis72.4992.8499.27817forward
CNT30371067Oryza barthiiOryza glumipatula55.0178.4899.68620forward
CNT3035635Oryza barthiiCucumis melo15.8846.6179.33179forward
CNT30103490Oryza barthiiOryza rufipogon73.3897.1899.76827forward
CNT30496193Oryza barthiiDigitaria exilis6.2120.6591.4370forward
CNT30117503Oryza barthiiOryza nivara39.4992.5299.55445forward
CNT30604579Oryza barthiiOryza punctata46.32101.9590.8522forward
CNT30551639Oryza barthiiOryza brachyantha20.8557.3297.02235forward

Expression of CNT30577705

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MFQAKHGHPCWGLGFQLPICPRDAGGSPCTDSSSCALPI*

>peptide 2 (42 aa)
MFISNVSVEARGLTGGMRSTGSAGFEGTFASIANKSLSELFS*

Sequence

>CNT30577705
AAGGCAGTTATTTGAATCAGTCTCCAACATACTTCAAATCATAGACCACACCATACAGCAAACATAGTATAAACATTGTCATAGAGAGTACAGCTGATAG
CAGCTTGTAATATTCTAGCATTACTTTGGTAGCATCCCTCTACAAAACATAGCAGACATCACCAGCTCTTCATCTTGGCCATACACATTCAACCTGACAA
GAAAACCATATCCCATTTTACAACATATGTAATCTGTACATGAAAATGTATCTACAAGAAATCAAAATAGTAGGTAGTGTGGAGTGCCTTACATGGTTTG
CTAGTGACAGACCACACTGACCAGAACATTTCGTCTCCTCAGTAGCATCATTTTGCAGAAGGTTGTCCATTGATTCATCTGAGCTGCTCTCAACATAAGG
TAATGGCAAATACTTCATCTCGGGATCGAAGGTGGGCATGTTTTGTGCGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGATACCATAGTTGTTCCTC
ATTCTCTTTGGCGCTCCACCTGTCAGGTAAGCAGGTTCACCATATGCTGGCATGGCAGCATTAGGAACGAAGACAGAAGTGTAGTCTGGGGTCAGGGTGT
CATCCTCCCAACCAAAGTCTGAAGAGCCAAATGAGTTGCTGCTCGTATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGAAGCAAGAGGTTTGACTGG
AGGCATGAGATCAACAGGCTCTGCCGGCTTTGAAGGCACCTTTGCAAGCATTGCAAACAAATCATTGTCTGAACTGTTTAGCTGAAAGAAAGCATCATCG
CCACAGGTCTTCAGAGGTGGAGCTAGTTTCTCTTGCTTGGCAGCGTTTTGCTTCAGGGAGAGCTTCTGAGCAACAGCTGGTTCATCAGGAAAGTTGACCT
TGGCTTTCTTGCCACGGATCTTGCGGGCTTCAGCGTCATATGCCCTAGCTGCCTCCTCAGCAGTGTTATATGTTCCAAGCCAAACACGGACACCCTTGCT
GGGGTCTCGGATTTCAGCTGCCCATTTGCCCCAGGGACGCTGGCGGATCCCCCTGTACTGATTCTTCCTCTTGCGCTTTGCCGATCTAGCAGTAGGTCCA
TCATGTTGGACAAGCTTTGTAGTCAAC