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Detailed information on CNT30604579


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696213Oryza punctataOryza sativa7544.5593.23384forward
CNT30672165Oryza punctataSetaria viridis39.2654.0381.09201forward
CNT30554851Oryza punctataOryza glaberrima101.9547.4190.8522forward
CNT30137863Oryza punctataLolium perenne15.2324.7684.6278forward
CNT30344350Oryza punctataEragrostis tef82.4254.6681.52422forward
CNT30362884Oryza punctataSorghum bicolor31.849.2282.82163forward
CNT30596860Oryza punctataOryza meridionalis101.9559.3291.19522forward
CNT30371038Oryza punctataOryza glumipatula7533.693.23384forward
CNT30103490Oryza punctataOryza rufipogon101.9561.3491.19522forward
CNT30577705Oryza punctataOryza barthii101.9546.3290.8522forward
CNT30117503Oryza punctataOryza nivara30.2732.2285.81155forward
CNT30551639Oryza punctataOryza brachyantha22.0727.5688.5113forward

Expression of CNT30604579

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSEEPNELLLVSESMFISNVSVDARGLTGGMKSTGSAGFAGTFLSLNASIANKSLSELFR*

Sequence

>CNT30604579
ACATTGTTTGCTAGTGACAGACCACACTGACCAGAACCTTCAGCCTCCTCAGTAGGCACCGGCTGTCCATTGATTCATCTGAGCTGCTCTCAACATAAGG
TAATGGCAAATACTTCATCTCAGGATCAAAGGTGGGCATGTTTTGTGTGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGACACCATAATTGTTCCTC
ATTCTCTTTGGCGCTCCACCCGTCAGGTAAGCAGGTTCACCATATGCTGGCATTGCAGCATTAGGAACGAAGACTGAAGTGTAGTCTGGGGTCAGGGTGT
CATCCTCCCAACCAATGTCCGAAGAGCCAAATGAGTTGCTGCTTGTATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGACGCAAGAGGTTTGACTGG
AGGCATGAAATCAACAGGCTCTGCCGGCTTTGCAGGCACCTTCTTGTCACTGAACGCAAGCATTGCAAACAAATCATTGTCTGAATTATTTAGATGAAAG
AAAGCATCATCG