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Detailed information on CNT30696213


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672165Oryza sativaSetaria viridis23.3254.0383.08201forward
CNT30555000Oryza sativaOryza glaberrima10073.5599.77862forward
CNT30344350Oryza sativaEragrostis tef26.2229.2783.19226forward
CNT30363137Oryza sativaSorghum bicolor24.8346.4279.91214forward
CNT30596811Oryza sativaOryza meridionalis90.4984.5199.23780forward
CNT30371038Oryza sativaOryza glumipatula10075.4299.88862forward
CNT30103395Oryza sativaOryza rufipogon10072.25100862forward
CNT30577713Oryza sativaOryza barthii10072.9399.77862forward
CNT30604579Oryza sativaOryza punctata44.557593.23384forward

Expression of CNT30696213

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSSSSRLQMPSLLAPSCVASFCRRLSIDSSELLST*

>peptide 2 (42 aa)
MFISNVSVEARGLTGGMRSTGSAGFAGTFASIANKSLSELFS*

Sequence

>CNT30696213
GTCATAGAGAGTACAGCTGATAGCAGCTTGTAATATTCTAGCATTACTTTGGTAGCATCCCTCTACAAAACATAGCAGACATCACCAGCTCTTCATCTTG
GCCATACACATTCAACCTGACAAGAAAACCATATCCCATTTTACAACATATGTAATCTGTACATGAAAATGTATCTACAAGAAATCAAAATAGTAGGTAG
TGTGGAGTGCCTTACATGGTTTGCTAGTGACAGACCACACTGACCAGAACATTTCGTCTCCTCAGTAGGCACCAGCTGCCATGAGCAGCTCATCAAGGCT
CCAGATGCCCTCGTTGCTTGCCCCGTCTTGTGTAGCATCATTTTGCAGAAGGTTGTCCATTGATTCATCTGAGCTGCTCTCAACATAAGGTGGGCATGTT
TTGTGCGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGATACCATAGTTGTTCCTCATTCTCTTTGGCGCTCCACCTGTCAGGTAAGCAGGTTCACCA
TATGCTGGCATGGCAGCATTAGGAACGAAGACTGAAGTGTAGTCTGGGGTCAGGGTGTCATCCTCCCAACCAAAGTCTGAAGAGCCAAATGAGTTGCTGC
TCGTATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGAAGCAAGAGGTTTGACTGGAGGCATGAGATCAACAGGCTCTGCCGGCTTTGCAGGCACCTT
TGCAAGCATTGCAAACAAATCATTGTCTGAACTGTTTAGCTGAAAGAAAGCATCATCGCCACAGGTCTTCAGAGGTGGAGCTAGTTTCTCTTGCTTGGCA
GCGTTTTGCTTCAGGGAGAGCTTCTGAGCAACAGCTGGTTCATCAGGAAAGTTGACCTTGGC