Detailed information on CNT30103395


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K7E6|ERF1_ORYSJ, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696213Oryza rufipogonOryza sativa72.25100100862forward
CNT30672165Oryza rufipogonSetaria viridis16.8554.0383.08201forward
CNT30641255Oryza rufipogonNymphaea colorata14.8426.6686.44177forward
CNT30539789Oryza rufipogonBrassica napus15.2627.4180.22182forward
CNT30555000Oryza rufipogonOryza glaberrima95.8197.5399.831143forward
CNT30475741Oryza rufipogonSaccharum spontaneum16.0136.6680.1191forward
CNT30137863Oryza rufipogonLolium perenne5.721.5997.0668forward
CNT30232688Oryza rufipogonAnanas comosus14.551.3481.5173forward
CNT30686876Oryza rufipogonTriticum urartu16.2646.0883.51194forward
CNT30362892Oryza rufipogonSorghum bicolor18.2729.1191.28218forward
CNT30596811Oryza rufipogonOryza meridionalis74.8596.7599.33893forward
CNT30371038Oryza rufipogonOryza glumipatula93.4697.5599.911115forward
CNT3035635Oryza rufipogonCucumis melo1546.6179.33179forward
CNT30577713Oryza rufipogonOryza barthii98.6699.5899.751177forward
CNT30496193Oryza rufipogonDigitaria exilis5.8720.6591.4370forward
CNT30551639Oryza rufipogonOryza brachyantha19.757.3297.45235forward

Expression of CNT30103395

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MFQAKHGHPCWGLGFQLPICPRDAGGSPCTDSSSCALLI*

>peptide 2 (35 aa)
MSSSSRLQMPSLLAPSCVASFCRRLSIDSSELLST*

>peptide 3 (42 aa)
MFISNVSVEARGLTGGMRSTGSAGFAGTFASIANKSLSELFS*

Sequence

>CNT30103395
ATAACTTAATAAGCACATTACAGCACACACATGGCCAAGGCAGTTATTTGAATCAGTCTCCAACATACTTCAAATCATAGACCACACCATACAGCAAACA
TAGTATAAACATTGTCATAGAGAGTACAGCTGATAGCAGCTTGTAATATTCTAGCATTACTTTGGTAGCATCCCTCTACAAAACATAGCAGACATCACCA
GCTCTTCATCTTGGCCATACACATTCAACCTGACAAGAAAACCATATCCCATTTTACAACATATGTAATCTGTACATGAAAATGTATCTACAAGAAATCA
AAATAGTAGGTAGTGTGGAGTGCCTTACATGGTTTGCTAGTGACAGACCACACTGACCAGAACATTTCGTCTCCTCAGTAGGCACCAGCTGCCATGAGCA
GCTCATCAAGGCTCCAGATGCCCTCGTTGCTTGCCCCGTCTTGTGTAGCATCATTTTGCAGAAGGTTGTCCATTGATTCATCTGAGCTGCTCTCAACATA
AGGTGGGCATGTTTTGTGCGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGATACCATAGTTGTTCCTCATTCTCTTTGGCGCTCCACCTGTCAGGTA
AGCAGGTTCACCATATGCTGGCATGGCAGCATTAGGAACGAAGACTGAAGTGTAGTCTGGGGTCAGGGTGTCATCCTCCCAACCAAAGTCTGAAGAGCCA
AATGAGTTGCTGCTCGTATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGAAGCAAGAGGTTTGACTGGAGGCATGAGATCAACAGGCTCTGCCGGCT
TTGCAGGCACCTTTGCAAGCATTGCAAACAAATCATTGTCTGAACTGTTTAGCTGAAAGAAAGCATCATCGCCACAGGTCTTCAGAGGTGGAGCTAGTTT
CTCTTGCTTGGCAGCGTTTTGCTTCAGGGAGAGCTTCTGAGCAACAGCTGGTTCATCAGGAAAGTTGACCTTGGCTTTCTTGCCACGGATCTTGCGGGCT
TCAGCGTCATATGCCCTAGCTGCCTCCTCAGCAGTGTTATATGTTCCAAGCCAAACACGGACACCCTTGCTGGGGTCTCGGATTTCAGCTGCCCATTTGC
CCCAGGGACGCTGGCGGATCCCCCTGTACTGATTCTTCCTCTTGCGCTTTGCTGATCTAGCAGTAGGTCCATCATGTTGGACAAGCTTTGTAG