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Detailed information on CNT30371038


BLAST search results

BLAST vs Swiss-Prot:
sp|O04681|PTI5_SOLLC, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696213Oryza glumipatulaOryza sativa75.4210099.88862forward
CNT30672165Oryza glumipatulaSetaria viridis17.5954.0383.08201forward
CNT30555000Oryza glumipatulaOryza glaberrima10097.5399.741143forward
CNT30596811Oryza glumipatulaOryza meridionalis80.5899.7899.46921forward
CNT30103395Oryza glumipatulaOryza rufipogon97.5593.4699.911115forward
CNT30577713Oryza glumipatulaOryza barthii96.1592.9899.731099forward
CNT30604579Oryza glumipatulaOryza punctata33.67593.23384forward

Expression of CNT30371038

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSSSSRLQMPSLLAPSCVASFCRRLSIDSSELLST*

>peptide 2 (42 aa)
MFISNVSVEARGLTGGMRSTGSAGFAGTFASIANKSLSELFS*

Sequence

>CNT30371038
TGTAGATACGCAATATGAGCACAACTATATAACTTAATAAGCACATTACAGCACACACATGGCCAAGGCAGTTATTTGAATCAGTCTCCAACATACTTCA
AATCATAGACCACACCATACAGCAAACATAGTATAAACATTGTCATAGAGAGTACAGCTGATAGCAGCATGTAATATTCTAGCATTACTTTGGTAGCATC
CCTCTACAAAACATAGCAGACATCACCAGCTCTTCATCTTGGCCATACACATTCAACCTGACAAGAAAACCATATCCCATTTTACAACATATGTAATCTG
TACATGAAAATGTATCTACAAGAAATCAAAATAGTAGGTAGTGTGGAGTGCCTTACATGGTTTGCTAGTGACAGACCACACTGACCAGAACATTTCGTCT
CCTCAGTAGGCACCAGCTGCCATGAGCAGCTCATCAAGGCTCCAGATGCCCTCGTTGCTTGCCCCGTCTTGTGTAGCATCATTTTGCAGAAGGTTGTCCA
TTGATTCATCTGAGCTGCTCTCAACATAAGGTGGGCATGTTTTGTGCGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGATACCATAGTTGTTCCTCA
TTCTCTTTGGCGCTCCACCTGTCAGGTAAGCAGGTTCACCATATGCTGGCATGGCAGCATTAGGAACGAAGACTGAAGTGTAGTCTGGGGTCAGGGTGTC
ATCCTCCCAACCAAAGTCTGAAGAGCCAAATGAGTTGCTGCTCGTATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGAAGCAAGAGGTTTGACTGGA
GGCATGAGATCAACAGGCTCTGCCGGCTTTGCAGGCACCTTTGCAAGCATTGCAAACAAATCATTGTCTGAACTGTTTAGCTGAAAGAAAGCATCATCGC
CACAGGTCTTCAGAGGTGGAGCTAGTTTCTCTTGCTTGGCAGCGTTTTGCTTCAGGGAGAGCTTCTGAGCAACAGCTGGTTCATCAGGAAAGTTGACCTT
GGCTTTCTTGCCACGGATCTTGCGGGCTTCAGCGTCATATGCCCTAGCTGCCTCCTCAGCAGTGTTATATGTTCCAAGCCAAACACGGACACCCTTGCTG
GGGTCTCGGATTTCAGCTGCCCATTTGCCCCAGGGACGCTGGC