« Back to Triticum dicoccoides search


Detailed information on CNT30666113


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 9e-49

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298904Triticum dicoccoidesTriticum aestivum92.4585.0198.49465forward
CNT30393934Triticum dicoccoidesTriticum turgidum92.64102.4289.91466forward
CNT30253603Triticum dicoccoidesAvena sativa46.5251.4396.15234forward
CNT30131032Triticum dicoccoidesLolium perenne55.6758.3393.57280forward
CNT30721915Triticum dicoccoidesTriticum spelta86.28100.9398.39434forward
CNT30346179Triticum dicoccoidesEragrostis tef46.9244.1193.22236forward
CNT30592819Triticum dicoccoidesEragrostis curvula46.1239.6693.53232forward

Expression of CNT30666113

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MARHLLATTETEHQVEGGLLLDVVVSEGATVLKLLASEDEALLVRRDALLVLDLRLDIVNRVRGLDLKGDGLAGEGLHKDLHLQT*

>peptide 2 (48 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVRVFTKICICKHKV

>peptide 3 (71 aa)
RLNSKRRHKFRAHLFIHFTVHPNLLHRSRKFTDTTKHKYITLDHSTVATKHKTRRGHTDNPIGGHRKATDL*

>peptide 4 (39 aa)
GLTAKGGTSSGLTYSFISQFIQICCTAAESSRTQPNIST*

Sequence

>CNT30666113
TAGGCTTAACAGCAAAAGGAGGCACAAGTTCAGGGCTCACTTATTCATTCATTTCACAGTTCATCCAAATCTGCTGCACCGCAGCAGAAAGTTCACGGAC
ACAACCAAACATAAGTACATAACACTAGACCACAGCACGGTAGCAACAAAGCACAAGACCAGACGAGGACACACTGACAATCCGATCGGAGGACACAGAA
AGGCAACCGACTTGTGAGCCCACAGACATAAGCAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTC
TGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCT
TCGCCTTGACATTGTCAATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCAAACATAAAGT
GTA