Detailed information on CNT30721915


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 2e-43

BLAST vs NONCODE:
NONSTUT000620, E-value = 9e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298904Triticum speltaTriticum aestivum10078.61100430forward
CNT30666113Triticum speltaTriticum dicoccoides100.9386.2898.39434forward

Expression of CNT30721915

SRR9114152: 0.85 RPKM

Peptides detected in this lncRNA

>peptide 1 (29 aa)
FRAHLFIHFTVHPNLLRSESSRTQPNIST*

>peptide 2 (35 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPV

>peptide 3 (60 aa)
QGSLIHSFHSSSKSAAVRKFTDTTKHKYITLDHSTVATKHKTRRGHTDNPIGGHRKATDL*

>peptide 4 (73 aa)
MARHLLATTETEHQVEGGLLLDVVVSEGATVLKLLASEDEALLVRRDALLVLDLRLDIVNRVRGLDLKGDGLAG

Sequence

>CNT30721915
TTCAGGGCTCACTTATTCATTCATTTCACAGTTCATCCAAATCTGCTGCGGTCAGAAAGTTCACGGACACAACCAAACATAAGTACATAACACTAGACCA
CAGCACGGTAGCAACAAAGCACAAGACCAGACGAGGACACACTGACAATCCGATCGGAGGACACAGAAAGGCAACCGACTTGTGAGCCCACAGACATAAG
CAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCGTC
CTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCAGAGGAC
TCGACCTCAAGGGTGATGGTCTTGCCGGTG