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Detailed information on CNT30393934


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 5e-49

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298263Triticum turgidumTriticum aestivum10060.2697.58455forward
CNT30666113Triticum turgidumTriticum dicoccoides102.4292.6489.91466forward
CNT30131032Triticum turgidumLolium perenne58.6855.6293.26267forward
CNT30721839Triticum turgidumTriticum spelta99.7866.3797.8454forward

Expression of CNT30393934

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MARHLLATTEAEHQVKGGLLLDVVVRQSAAILELLTSKDEALLVRRDALLVLDLRLDVVDRVRGLDLKGDGLAGEGLHKDLH

>peptide 2 (42 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVRVFTKIC

>peptide 3 (61 aa)
KQAQVQGSFIHSSSSKSAAAQHKVQTQPDITLDHNTVATKNKTRRGHADNHNGVHRKTTDS*

>peptide 4 (29 aa)
NRHKFRAHLFIQVHPNLLQHSIKFRHSQI*

Sequence

>CNT30393934
AAAACAGGCACAAGTTCAGGGCTCATTTATTCATTCAAGTTCATCCAAATCTGCTGCAGCACAGCATAAAGTTCAGACACAGCCAGATATAACGCTAGAC
CACAACACGGTAGCAACAAAGAACAAGACCAGACGAGGACACGCTGACAATCACAACGGAGTACACAGAAAGACAACCGACTCGTGAGCCCAGAGACATA
AGCAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCA
TCCTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCAGAGG
ACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT