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Detailed information on CNT30653852


BLAST search results

BLAST vs Swiss-Prot:
sp|P42027|NDUS7_BRAOL, E-value = 3e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377550Rosa chinensisArabidopsis thaliana3.7220.4487.556forward
CNT30617683Rosa chinensisSesamum indicum15.685787.29236forward
CNT30273993Rosa chinensisChenopodium quinoa15.7546.2979.75237forward
CNT30166899Rosa chinensisPistacia vera10.733.0688.2161forward
CNT30311073Rosa chinensisCamelina sativa8.3132.5583.2125forward
CNT30363204Rosa chinensisSorghum bicolor7.6424.3187.83115forward
CNT30570482Rosa chinensisVitis vinifera5.9137.8787.6489forward
CNT30112805Rosa chinensisFicus carica17.2848.8790260forward

Expression of CNT30653852

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKPVLFSQIELNLYKHHYHYEAGTQVSYIASIQHINLI*

>peptide 2 (44 aa)
IFSMKIKTLFPCLLVHNIKTEHVKSQRLEQVLISTYKEASRIKS*

>peptide 3 (40 aa)
MGQMEPRRAQFIRSSTLEITNSAALERPAGDDVAGGGGRS*

Sequence

>CNT30653852
GAATTTTCAGTATGAAGATCAAAACCCTATTCCCTTGTTTACTTGTGCATAACATAAAGACTGAACATGTGAAGAGCCAGAGATTGGAGCAAGTTCTAAT
ATCAACATATAAGGAAGCATCAAGAATAAAATCATAAGGAACAAAATGTAGGCAAATACTCATCAAAAGGCAGGCATGTGCAAGGCAAGGCCGAAGGTAG
ATATTTAACAGAACAAGAGATAACCTGAATTTGTTACCCTTCTGTAGTTTATTTAACACAAAGATTAGAAAGGTCAAGAGCTTCTAAGTCCCAAATCTTT
GAAACAGATGTGGAAATATTAAAATACCTCCTCCAGGCAGGCATCGAAACAAGCTTGAGTTTGCAATCATGTACTAATATTAACTACAGCCAACACCCCA
TGGTTCGCAGATCAGGGGTCGACTAGTGTTTTCCCTTTGTGGGATTCACAAAACCCTATGAAACCAGTCTTGTTTAGTCAAATTGAGTTGAACTTATACA
AGCACCATTACCATTACGAGGCAGGAACGCAAGTAAGCTACATAGCTAGCATTCAACATATTAATCTAATATGAAGAAGAAACTGAATAAAAAGAAAATA
AGATAAACCAAGAGACTTCCTTTGACTTGACAAAGAGGCCAAAATGTCGACTATCAGATATATCTTAAATTCTTCCCCTCAATTGATCAATGTTTACTGG
CTCATATCAAGTAAGAGGAAGAGCTAAGAGCTTCCCAATATTAAGGAAAGTATAGACTTCAACTATCATCAAAACGCAGGCCTGAAAATCTAGCTAGTCT
TTGTCATCCACAAAAAAAAAAAAGCAAATCGAAGTAGGTCTCTGTAAGTGGTACTGCGATTCCCATTTAATTGGATTCGAAAACCAGAGGCAATCATCAA
ACTGAGCTCAACCTAGACAAAATCCAATTTTCCAAATCACATACACACAGATTTGGGATTGAATCCAAAACCCTAAAACAAGAATAGGAATTGAGGGAGG
GAGGAGAAGACTTACTTGCGGAGAGCGGGGGCCATCTTATTGGTGAGAGTACCGGCGACGATCATGCAATCGGACTGGCGTGGGCTGGGCCGGAAAATGA
TTCCGAAGCGGTCCAAATCGTAGCGCGCAGCTCCGGTGTGCATCATCTCGACGGCGCAGCAGGCGAGGCCGAAGGTCATGGGCCAGATGGAGCCGCGCCG
GGCCCAGTTCATCAGATCGTCGACCTTGGAGATCACGAACTCCGCCGCCTTGGAGAGGCCGGCCGGGGACGACGTGGCCGGTGGAGGAGGGCGGTCATAG
GTGGCCGGAGAGGAGGTGGCGGAGGAGTAGAGAGAAGGGGTGGTGGTGTGGAGGGAGAGGGCACGCGCGGGACTCGAGTCAGCAGAGCCATGGCTGAGAA
CCTAAGACTGAGAGAGAAGAAGAAGCAGGAGAGGTTTTGAGGGAGAAAAGCTCTAATGGCCCGAGGCTCTTTTTCTCTAATTCTCCATCTGCCTGGGTAA
AATGG