Detailed information on CNT30273993


BLAST search results

BLAST vs Swiss-Prot:
sp|P42027|NDUS7_BRAOL, E-value = 5e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617683Chenopodium quinoaSesamum indicum44.9255.5682.61230forward
CNT30653852Chenopodium quinoaRosa chinensis46.2915.7579.75237forward
CNT3023971Chenopodium quinoaPopulus trichocarpa37.8946.1986.6194forward
CNT30112805Chenopodium quinoaFicus carica46.0944.3679.66236forward

Expression of CNT30273993

Peptides detected in this lncRNA

>peptide 1 (70 aa)
AKSRSHLISKSTSNNHTIRLTRTRPKDNPKAIQIVTSSTSMHHLNSTTSKPKSHGPNGPTTGPVHEVINL*

>peptide 2 (29 aa)
MRLELGAPLMKEERERETQRWGNGGGERK*

>peptide 3 (34 aa)
MGQMDPRRAQFMRSSTFEMTYSAALGRAGGGALA*

Sequence

>CNT30273993
GCGAAGAGCAGGAGCCATCTTATTAGTAAGAGTACCAGCAACAATCATACAATCAGATTGACGAGGACTAGGCCTAAAGATAATCCCAAAGCGATCCAGA
TCGTAACGAGCAGCACCAGTATGCATCATCTCAACAGCACAACAAGCAAGCCCAAAAGTCATGGGCCAAATGGACCCACGACGGGCCCAGTTCATGAGGT
CATCAACCTTTGAGATGACGTACTCCGCCGCCTTGGGGAGGGCGGGAGGTGGGGCTCTGGCGTAGGTGGTGGGTTGAGTGGTGGATGAGGCGGAGGAGAG
AGAAGGGTGGGTGGTGTGGAAGGCGGAAGAGAAATGGGGGAGGGTTTTAAGGGTGGTTGTTGTGCGGGTTGATGCGGCTCGAGCTAGGAGCGCCATTGAT
GAAGGAGGAGAGAGAAAGAGAGACACAGAGATGGGGAAATGGGGGAGGAGAGAGAAAGTGAGTTGTTTAAATTAGGAGATGGGGAAATTGGGTCGGTTTA
TTTGTTTTCCCT