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Detailed information on CNT30632424


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531932Vigna unguiculataEucalyptus grandis17.0422.7393.85130reverse complement
CNT30202237Vigna unguiculataPisum sativum13.540.2390.29103reverse complement
CNT30507074Vigna unguiculataNicotiana attenuata6.2923.6510048forward
CNT30193417Vigna unguiculataSecale cereale26.0861.4291.46199forward
CNT30147536Vigna unguiculataMedicago truncatula59.519.2591.63454forward
CNT30438074Vigna unguiculataAegilops tauschii26.088.5491.46199reverse complement
CNT30622536Vigna unguiculataCajanus cajan65.1430.0196.58497forward
CNT30596810Vigna unguiculataOryza meridionalis29.2311.7382.96223reverse complement
CNT30152492Vigna unguiculataPrunus persica44.0426.6782.74336forward
CNT30725731Vigna unguiculataLupinus angustifolius41.1520.9897.45314forward

Expression of CNT30632424

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRKWKIFNITTSRDMDGVSLSKESCRFVEKERSLDFL*

>peptide 2 (30 aa)
MRLSSHRPFRRAPDLFFLLIPKTYLKWSLV*

>peptide 3 (39 aa)
MGQRIKRFDFVSRDSPQVGFESRVMGDYPARFGEHFKSA*

Sequence

>CNT30632424
GGAAGGGAAGGAGCCTAAATCGACCCCCTTCTTTTTAATTTGAAAAAGAAAAAAGCAGTACAAAGAGATTAGACTCTCGGATGAGACTAAGCAGCCACCG
ACCGTTCCGACGCGCCCCTGACCTATTTTTTTTATTAATACCGAAAACCTATCTAAAATGGAGCCTAGTTTAGGCTGTCAAACAAATGAGAAAATGGAAA
ATTTTTAATATAACCACTAGTAGGGATATGGATGGAGTCTCGCTCAGTAAAGAGAGTTGTAGATTCGTAGAAAAGGAGAGGAGCCTTGACTTTCTATGAT
GTTATTAGTCAAGAAGCGCTAACGCTGCAATCTTTCTAAAGCAAGAAGCGATAAACTTGACTTTGAGAAAGAAGGTGCTTGTTGCCGCTTTCTTTTTTTA
GTAAGTAAACTTGTTTTGTTTTATAAGGCGAAAGGTTGCTATTTGAATAATGATTATAGCGTTAGCGCTTTCGTTTTCAATCAGTTTAGGCTTGACTTAT
TCGAACCGAACGATAGCGGCTTAAAGCTAAGCCTATCACGAGCAGCGTCGCTGCTTGATCGGCGGGGAGAAGCATCTCAAAGTATGGGGCAAAGGATCAA
GCGCTTTGACTTTGTCTCCCGGGATTCACCACAGGTTGGGTTTGAGAGCCGTGTGATGGGTGACTATCCAGCACGGTTCGGAGAGCACTTTAAGTCTGCG
TAGGTGAATGGAAGCCCCTCTTGAAAGCAAGAAAGAAGCGGCTATTCCCACGGCGGAGTCACC