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Detailed information on CNT30438074


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531932Aegilops tauschiiEucalyptus grandis5.3721.8587.2125forward
CNT30729667Aegilops tauschiiCorchorus capsularis9.9625.5591.38232reverse complement
CNT30632424Aegilops tauschiiVigna unguiculata8.5426.0891.46199reverse complement
CNT30507074Aegilops tauschiiNicotiana attenuata1.9322.1795.5645reverse complement
CNT30193417Aegilops tauschiiSecale cereale13.7498.77100320reverse complement
CNT30147536Aegilops tauschiiMedicago truncatula24.0423.7487.14560reverse complement
CNT30622536Aegilops tauschiiCajanus cajan27.9939.3787.73652reverse complement
CNT30596810Aegilops tauschiiOryza meridionalis24.329.7797566forward
CNT3035318Aegilops tauschiiCucumis melo22.6732.5785.42528forward
CNT30725731Aegilops tauschiiLupinus angustifolius35.9455.9185.78837reverse complement

Expression of CNT30438074

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PWEEPLLFCGGGFHSPAQTTYTCSLNRAR*

>peptide 2 (75 aa)
MISTFNCAPETRSKHARPVCVFHDMLWSRVSSCGLLALEEVVSVPDICNVLSRLFWGDKQRSGKDGPNPFXXXXL*

Sequence

>CNT30438074
GCCGTGGGAAGAGCCGCTTCTTTTTTGCGGCGGGGGCTTCCATTCACCAGCGCAGACTACATACACGTGCTCTCTGAACCGTGCTAGATAGTCACCCATC
ACACGGCTCTCAAACCCAACCTGTGGTGGATCCCGGGGGACAAAGCAAAGTCAAAGCGCTTGATCCTTTGCCCCATACTTTGAGATCTTCCTCCCCGCCG
ATCAAGCAGCAACGCAGCTCGTGATAGGCTTAGCTTAAGCCGCTAACGTTCGGTTCGGATAAGTAAAGTCCCTTCGGTCGGTTCGCTCAGGTGGTCTTCC
CTTATTTTCCCTAACGTTCAGAGTTGTTCTGGTTTGAGAAAGGAGCACCGCCAAGTCCACTAGGGGCGCCCTGAATGAATAAGAAATGGACAGCTGAGGT
CAGGCTTGCGTGAAAAAAGAAGATAATAAGTTAGATGTACACACCTGAGGTTGGTAAGAACTGAGGGACAATGCCCCCCTCACTGGGCCCATCAGCGAAA
GCAACTGCTACTTAATCGTAGGTTTGCTTTCGTGTAAGGCCCCCGCTGCTGGAACAGGCGGTTGTCATTTTCAAGTAAACGCCCCGCCCCCTTTCTTTGC
CCGCCGGCCGCCTAGCTCGTTATTCTTTGAGATCTGGATAGAGTCTCGCTTCGGGGCGGGGGAAGCATGGATTCGATAGATCTATCGAATCCATGCTGCA
AGCAGCAAGCGTAGGCTAAAAAGGCAATAGTCTAACGTTGGGGTAGGGCGCGCCAAAACAACCGGGGGCCCCTCCGGGGTCAGTACAAAAGTACTATATT
CTTTCCACTTACTTTCATTGGCTAGCTGCCTTTTGTAGCGCGCGTACTCTGATCCTCTTCTACGAATCTACAACTCTCTTTACTGAGCGAGACTTCATCT
ATATCCCTCAAAGTGGATTTGGATTCCCATTTCTTCTTTGAATGACAGCTTCAACTAGGCTCCACCTTAGAGAGGGTTTTCGGTTTGAATCAAGATAGGG
TCAGGGGCGCGTCGGAACGGTAGCTGCTTAGTCTCATCCGAGAGTCCAATCTCTTTGTACTGTGCTTGCTTTTGTGTCTTTGAATAAAAAAGAAAGAAGG
GGGTCGATTTAGGCTCCTTCCCTTCCACTGCATAGCTGCGCTATCAGGTACTACGAGCCCTCTGCCCCACGCATCTAACCAGCTCGCGTGGTTCACCGGT
TCCACCGAAAACTCTCATTTGTTGAAGCGGAGCATAGTGTGGCGTCGAGCGAGAAAGGTCTCTTTTTTGGTTTATTCACTGATCTGAAATGAAACTTAGC
ACTTGTTTTTTTATTGATTCCTGGGGCTAGGCGTTCGCAGAATCAGTCTATCCGAACCGCAGACGCACTTTTCAGATCAGTGACGGCCTCTCCAGCAGAG
CTGGGCGCCGGGGCCCTGGATGCGCTAGCGATCGGCACATTAGGGGAGTACTTGCCCGGGTTTCTCGGCCTGGTATCCTTATCCTCGCGTTCATGATATC
TACATTCAACTGTGCCCCGGAGACACGGTCGAAGCACGCCCGCCCCGTGTGCGTCTTTCACGACATGCTCTGGTCCCGGGTTTCTTCCTGTGGTCTTCTA
GCGTTAGAAGAAGTCGTGTCCGTCCCGGACATCTGCAACGTCCTCTCACGCCTTTTTTGGGGGGACAAACAAAGATCAGGAAAAGACGGACCGAACCCAT
TCGGNNNNNNNNNNTTGTAGCGCGCGTACTCTGATCCTCTTCTACGAATCTACAACTCTCTTTACTGAGCGAGACTTCATCTATATCCCTCAAAGTGGAT
TTGGATTCCCATTTCTTCTTTGAATGACAGCTTCAACTAGGCTCCACCTTAGAGAGGGTTTTCGGTTTGAATCAAGATAGGGTCAGGGGCGCGTCGGAAC
GGTAGTTGCTTAGTCTCATCCGAGAGTCCAATCTCTTTGTACTGTGCTTGCTTTTGTGTCTTTGAATAAAAAAGAAAGAAGGGGGTCGATTTAGGCTCCT
TCCCTTCCACTGCATAGCTGCGCTATCAGGTACTACGAGCCCTCTGCCCCACGCATCTAACCAGCTCGCGTGGTTCACCGGTTCCACCGAAAACTGTCAT
TTGTTGAAGCGGAGCATAGTGTGGCGTCGAGCGAGAAAGGTCTCTTTTTTGGTTTATTCACTGATCTGAAATGAAACTTAGCACTTGTTTTTTTATTGAT
TCCTGGGGCTAGGCGTTCGCAGAATCAGTCTATCCGAACCGCAGACGCACTTTTCAGATCAGTGGCGGCCTCTCCAGCAGAGCTGGGCGCCGGGGCCCTG
GATGCGCTAGCGATCGGCACATTAGGGGA