Detailed information on CNT30193417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30729667Secale cerealeCorchorus capsularis62.0422.1490.55201forward
CNT30632424Secale cerealeVigna unguiculata61.4226.0891.46199forward
CNT30507074Secale cerealeNicotiana attenuata13.8922.1795.5645forward
CNT30147536Secale cerealeMedicago truncatula41.675.7291.85135forward
CNT30438074Secale cerealeAegilops tauschii98.7713.74100320reverse complement
CNT30622536Secale cerealeCajanus cajan84.5716.5590.15274forward
CNT30596810Secale cerealeOryza meridionalis44.757.6399.31145reverse complement

Expression of CNT30193417

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGDYLARFREHVYVVCAGEWKPPPQKRSGSSHGS

Sequence

>CNT30193417
TGAACGTTAGGGAAAATAAGGGAAGACCACCTGAGCGAACCGACCGAAGGGACTTTACTTATCCGAACCGAACGTTAGCGGCTTAAGCTAAGCCTATCAC
GAGCTGCGTTGCTGCTTGATCGGCGGGGAGGAAGATCTCAAAGTATGGGGCAAAGGATCAAGCGCTTTGACTTTGCTTTGTCCCCCGGGATCCACCACAG
GTTGGGTTTGAGAGCCGTGTGATGGGTGACTATCTAGCACGGTTCAGAGAGCACGTGTATGTAGTCTGCGCTGGTGAATGGAAGCCCCCGCCGCAAAAAA
GAAGCGGCTCTTCCCACGGCTCTG