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Detailed information on CNT30622536


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531932Cajanus cajanEucalyptus grandis7.4321.594.31123reverse complement
CNT30729667Cajanus cajanCorchorus capsularis20.8938.1191.33346forward
CNT30632424Cajanus cajanVigna unguiculata30.0165.1496.58497forward
CNT30202237Cajanus cajanPisum sativum13.2985.9491.82220reverse complement
CNT30507074Cajanus cajanNicotiana attenuata3.0224.6310050forward
CNT30193417Cajanus cajanSecale cereale16.5584.5790.15274forward
CNT30147536Cajanus cajanMedicago truncatula91.8564.4893.821521forward
CNT30438074Cajanus cajanAegilops tauschii33.4523.7989.53554reverse complement
CNT30655398Cajanus cajanRosa chinensis38.5928.7290.92639reverse complement
CNT30596810Cajanus cajanOryza meridionalis29.5325.7289.37489reverse complement
CNT3035318Cajanus cajanCucumis melo31.8232.5191.84527reverse complement
CNT30725731Cajanus cajanLupinus angustifolius49.9455.2497.46827forward

Expression of CNT30622536

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MEPAVKQMRKWKIMNITTCRDMDGVSLSKESCRFVEKERSLDFL*

>peptide 2 (40 aa)
PGRTRLLLTLEDHWKTPGTRACRERSTLGGRASTVSPGHS*

>peptide 3 (36 aa)
MGQRIKRFDFVSRDSPQVGFESRVMGDYPARFGEHF*

>peptide 4 (36 aa)
MNARCRIPGRETRATTPYVPIASASRAPAPSSAGEA*

>peptide 5 (31 aa)
MTTASSCCEGLARNQPPHPRSSTSCFAGRPT*

Sequence

>CNT30622536
CCGGGACGGACACGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCCGGGACCAGAGCATGTCGTGAAAGAAGCACACTGGGCGGGCGTGCTTCGA
CCGTGTCTCCGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCAGGATACCAGGCCGAGAAACCCGGGCAACCACCCCCTATGTGCCGATCGCT
AGCGCATCCAGGGCCCCGGCGCCCAGCTCCGCTGGAGAGGCCTAGCCTGATCTGAGAAGTGCTAATTCGGTTCGGATAGACTTCATTCAAGAACGCCGCC
GCCCCTGGAATCAATAAGAAAACAAGTGCTAAGTTTCAGATCAGTGAATAAACCGAAACGAAAGAAGAAAGAGACCTTTCTCGCTCGGCGCCTAAAGCGC
ACTATGCTCCGCTTCAACAAATGAGAGTTTTCGGTGGAACCGGTGAACCACGCGAGCTGGTTAGATGCGTGGGACAGAGGGCTCATAGTACCTGCTAGCG
CAGCTATGCAGTGGAAGGGAAGGAGCCTAAATCGACCCCCTTCTTTTTAATTTGAAAAAGAAAAAAGCAGTACAAAGAGATTAGACTCTCGGATGAGACT
AAGCAGCCACCGACCGTTCCGACGCGCCCCTGACCTATTTTTTTATTAAGACCGAAAACCTATCTAAAATGGAGCCGGCTGTCAAACAAATGAGAAAATG
GAAAATTATGAATATAACCACTTGTAGGGATATGGATGGAGTCTCGCTCAGTAAAGAGAGTTGTAGATTCGTAGAAAAGGAGAGGAGCCTTGACTTTCTA
TGATGTTCTTAGTCAAGAAGCGCTAACGCTGCAATCTTTCTAAAGCAAGAAGCGAGAAACTTGACTTTGAGAAAGAAGGTGCTTGTTGCCGCTTTCTTTT
TTTAGTAAGTAAACTTGTTTTGTTTTATAAGGCGAAAGGTTGCTATTTTAATAATTATTATAGCGTTAGCGCTTTCGTTTTCAATAAGTTTAGGCTTGAC
TAAGAACATAGAAATTTTGAATCAGGGTGCGCAGGTTTGGAACCCTATACAAAGACAAAGGGCCTTTCCCTTCAAATGACAACTGCCTCTTCCTGCTGCG
AAGGCCTTGCACGAAACCAACCCCCCCACCCCCGATCCAGTACCAGTTGTTTCGCTGGTAGGCCCACTTAGGTTAGGGGGGCATTGTCCCTCAGTTCTTA
CCAACCTCCGGTGTGTAATCGACATGTTGCTAACTTCAACTCGGTTGAATAAGAATCATTGATTCCCTTTGCTGTCCATTTCTTATTCATTCAGGGCGCT
CGGCCGGTGCTCCTTTTTTAAACCAGAACAACTCTGAACGTTAGAGAAGATAGATAAGGGAAGACCACCTGAGCGAACCGACCGAGGGGACTTGACTTAT
TCGAACCGAACGATAGCGGCTTAAAGCTAAGCCTATCACGAGCAGCGTCGCTGCTTGATCGGCGGGGAGAAGCATCTCAAAGTATGGGGCAAAGGATCAA
GCGCTTTGACTTTGTCTCCCGGGATTCACCACAGGTTGGGTTTGAGAGCCGTGTGATGGGTGACTATCCAGCACGGTTCGGAGAGCACTTTTAGTCTGCG
TAGGTGAATGGAAGCCCCTCTTGAAAGCAAGAAAGAAGCGGCTATTCCCACGGCGG