« Back to Oryza meridionalis search


Detailed information on CNT30596810


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632424Oryza meridionalisVigna unguiculata14.8937.0982.33283reverse complement
CNT30507074Oryza meridionalisNicotiana attenuata2.3722.1795.5645reverse complement
CNT30193417Oryza meridionalisSecale cereale7.6344.7599.31145reverse complement
CNT30147536Oryza meridionalisMedicago truncatula26.6221.4586.56506reverse complement
CNT30438074Oryza meridionalisAegilops tauschii29.7724.397566forward
CNT30622536Oryza meridionalisCajanus cajan25.7229.5389.37489reverse complement
CNT3035318Oryza meridionalisCucumis melo25.2529.6185.21480forward
CNT30725731Oryza meridionalisLupinus angustifolius26.6733.8789.15507reverse complement

Expression of CNT30596810

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MSITHLRLVRTEGQCPPHWAHQRSNCYLIGRFAFVQGPRCWNRRLAFSSKRPAPEGRPRSIGKTL*

>peptide 2 (68 aa)
MKLSTCFLLIPGARRSQNQSIRTADALFRSVTASPAELGAGALDALAIGTLGEYLPGFLGLVSLSSRS*

>peptide 3 (35 aa)
MPPSLGPSAKQLLLNRAVCFRARPPLLEQAVGIFK*

>peptide 4 (50 aa)
MISTFNCAPETRSKHARPVCVFHDMLWSRVSSCGLLALEEVVSVPDICNVL

Sequence

>CNT30596810
GCAGACTACATACACGTGCTCTCTGAACCGTGCTAGATAGTCACCCATCACACGGCTCTCAAACCCAACCTGTGGTGGATCCCGGGGGACAAAGCAAAGT
CAAAGCGCTTGATCCTTTGCCCCATACTTTTAGATCTTCCTCCCCAACAAGCAACGGGTTGAGCGCACTAGCGCGAAAGCGTTAGCACGCGCATCCGTTT
TCTTGCTCCGATCAAGCAGCAACGCAGCTCGTGATAGGCTTAGCTTAAGCCGCTAACGTTCGGTTCGGATAAGTAAAGTCCCTTCGGTTGGTTCGCTCAG
GTGGTCTTCCCTTATTTTCCCTAACGTTCAGAGTTGTTCTGGTTTGAGAAAGGAGCACNGCCAAGTCCACTAGGGGCGCCCTGAATGAATAAGAAATGGA
CAGCTGAGGTCAGGCTTGCATGAAAAAAGAAGATAATAAGTTAGATGTCGATTACACACCTGAGGTTGGTAAGAACTGAGGGACAATGCCCCCCTCACTG
GGCCCATCAGCGAAGCAACTGCTACTTAATCGGGCGGTTTGCTTTCGTGCAAGGCCCCCGCTGCTGGAACAGGCGGTTGGCATTTTCAAGTAAACGCCCC
GCCCCAGAAGGACGCCCTCGCTCTATTGGCAAAACGCTTTGAAAGAAGAACGTATCGCCAAGGCCCCGACCGGCCGGCCCGCCCCCTTTCTTTGCCCGCC
GGCCGCCTAGCTCGTTATTCTTTGAGATCTGGATAGAGTCTCGCTTCGGGGCGGGGGAAGCAGCAAGCGTAGGCTAAAAAGGCAATAGTCTAACGTTGGG
GTAGGGCGCGCCAAAACAACTGGGGGCCCCGGAGGNTTCGGGGCGGGGGAAGCAGCAAGCGTAGGCTAAAAAGGCAATAGTCTAACGTTGGGGTAGGGCG
CGCCAAAACAACTGGGGGCCCCGGAGGGGTCAGTACAAAAGTACTATATTCTTTCCACTTACTTTCATTGGCTAGCTGCCTTTTGTAGCGCGCGTACTCT
GATCCTCTTCTACGAATCTACAACTCTCTTTACTGAGCGAGACTTCATCTATATCCCTAAAAGTGGATTTTTATTCCCATTTTTTCTTTGAATGACAGCT
TCAACTTGGCTCCACCTTAGAGAGGGTTTTCGGTTTTAATCAAGATAGGGTCAGGGGCGCGTCGGAACGGTAGCTGCTTAGTCTCATCCGAGAGTCCAAT
CTCTTTGTACTGTGCTTTTGTGTCTTTGAATAAAAAAGAAAGAAGGGGGTCGATTTAGGCTCCTTCCCTTCCACTGCATAGCTGCGCTATCAGGTACTAC
GAGCCCTCTGCCCCACGCATCTAACCAGCTCGCGTGGTTCGCCGGTTCCACCGAAAACTCTCATTTGTTGAAGCGGAGCATAGTGCGGCGCCGAGCGAGA
AAGGTCTCTTTNCCCTCTGCCCCACGCATCTAACCAGCTCGCGTGGTTCGCCGGTTCCACCGAAAACTCTCATTTGTTGAAGCGGAGCATAGTGCGGCGC
CGAGCGAGAAAGGTCTCTTTTTTCGGTTTATTCACTGATCTGAAATGAAACTTAGCACTTGTTTTTTATTGATTCCTGGGGCTAGGCGTTCGCAGAATCA
GTCTATCCGAACCGCAGACGCACTTTTCAGATCAGTGACGGCCTCTCCAGCGGAGCTGGGCGCCGGGGCCCTGGATGCGCTAGCGATCGGCACATTAGGG
GAGTACTTGCCCGGGTTTCTCGGCCTGGTATCCTTATCCTCGCGTTCATGATATCTACATTCAACTGTGCCCCGGAGACACGGTCGAAGCACGCCCGCCC
CGTGTGCGTCTTTCACGACATGCTCTGGTCCCGGGTTTCTTCCTGTGGTCTTCTAGCGTTAGAAGAAGTCGTGTCCGTCCCGGACATCTGCAACGTCCTC
T