« Back to Eucalyptus grandis search


Detailed information on CNT30531932


BLAST search results

BLAST vs Swiss-Prot:
sp|P27754|RT03_OENBE, E-value = 5e-88

BLAST vs NONCODE:
NONORUT002283, E-value = 1e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632424Eucalyptus grandisVigna unguiculata22.7317.0493.85130reverse complement
CNT30507074Eucalyptus grandisNicotiana attenuata8.7424.6310050reverse complement
CNT30193918Eucalyptus grandisSecale cereale39.1636.5490.18224forward
CNT30438074Eucalyptus grandisAegilops tauschii21.855.3787.2125forward
CNT30622536Eucalyptus grandisCajanus cajan21.57.4394.31123reverse complement
CNT30597171Eucalyptus grandisOryza meridionalis16.2639.7492.4793reverse complement
CNT30336644Eucalyptus grandisCynara cardunculus99.8337.9488.44571forward

Expression of CNT30531932

Peptides detected in this lncRNA

>peptide 1 (37 aa)
PEVIGLYSSLSMVIGHGIHSLASFSAKSGFRFASPEA*

>peptide 2 (44 aa)
MKKTPDRPDFPKCPPPALLLSGSGFFASWSVGKKEMNKCSFGKM*

>peptide 3 (45 aa)
MVSIALLLFRPNPDFVLLLLKPDRLDSFPCPPASHFVSFFFCIVA*

Sequence

>CNT30531932
CCCGAAGTAATTGGGTTATATTCTTCTTTATCGATGGTGATCGGTCATGGTATCCATAGCCTTGCTTCTTTTTCGGCCAAATCCGGATTTCGTTTTGCTT
CTCCTGAAGCCTGATCGACTCGACTCTTTTCCCTGTCCCCCGGCCTCTCACTTCGTTTCGTTCTTCTTCTGTATCGTCGCTTGAATGAAGAAGACACCCG
ATCGGCCCGACTTTCCCAAATGCCCACCACCGGCCCTTCTCCTTTCCGGGTCTGGATTTTTTGCGTCGTGGTCGGTGGGGAAGAAAGAAATGAATAAATG
TTCTTTTGGGAAAATGTAGAATAATACACCTACCGAGACGAAAGCCAAAGGTGAGTCTCGTAGGTGGACGTATCGAACCGAAATAAGATCTCAGATTGAC
ATCTTGATAGACTGATTTACCATAATAATAAATAGAGTCAATGGTGACTCCGCCGTGGGAAGAGCCGCTTCTTTCTTGCTTGATAGGGGGGCTTCCATTC
ACCAGCGCAGACTAAAAGTGCTCTCCGAACCGTGCTGGATAGTCACCCATCACACGGCTCTCAAACCCAACC