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Detailed information on CNT30367262


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672427Sorghum bicolorSetaria viridis13.5837.9591.7685forward
CNT30196423Sorghum bicolorPisum sativum8.7923.590.9155forward
CNT30712354Sorghum bicolorGlycine max19.0125.8181.51119forward
CNT30223246Sorghum bicolorHordeum vulgare17.8943.9283.04112forward
CNT30613938Sorghum bicolorArabis alpina11.8228.7987.8474forward
CNT30451043Sorghum bicolorSaccharum spontaneum27.4820.1997.67172forward
CNT30722154Sorghum bicolorTriticum spelta14.2239.5685.3989forward
CNT30595552Sorghum bicolorOryza meridionalis13.7438.0591.8686forward
CNT30424411Sorghum bicolorPapaver somniferum26.220.4282.93164forward
CNT30570947Sorghum bicolorVitis vinifera8.4721.4690.5753forward
CNT30325214Sorghum bicolorAsparagus officinalis20.134285.71126forward
CNT30150813Sorghum bicolorBrachypodium distachyon21.0923.284.85132forward
CNT30550306Sorghum bicolorOryza brachyantha25.2439.0184.81158forward

Expression of CNT30367262

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPPAPPMSAPAPWYILAMMGLHSDSSSFILSSNSTFFSPTLVAFLSRP*

>peptide 2 (46 aa)
PNQNNTVVLLNACHDNIVHQPTDHHEVQKLINHHHKKFQPTTDKHY*

Sequence

>CNT30367262
ACCGAACCAGAATAATACCGTAGTATTACTTAACGCTTGCCACGATAACATTGTTCACCAACCAACCGACCATCACGAGGTCCAAAAATTAATTAACCAC
CACCACAAAAAGTTCCAACCAACCACAGATAAACATTACTAAAATAACGCGGACACGCCACGACGACGACGATAACTCGCAAGCTGCCACCCACTAGCGC
AACCTGCAGACCTGACAACGAACCGCTTAGTCGACCTCCTCGATCTTGGGGCCAGGGCCGCCGCTGCCCGCGGGTGCGTCCTCGTCCATGCCGCCGGCGC
CGCCCATGTCGGCGCCCGCGCCCTGGTACATCTTGGCGATGATGGGGTTGCACAGCGACTCGAGCTCCTTCATCTTGTCCTCGAACTCGACATTCTTCTC
GCCAACACTGGTTGCCTTCTTGTCAAGACCATAGGCGATAGCAGCAGCAGTTGGCTCATTGATGATACGGAGGACGTTGAGGCCAGCAATCACCCCAGCA
TCCTTTGTGGCCTGCCTCTGTGAGTCGTTGAAGTAGGCAGGGACTGTGACAACAGCATTCTTGATCGTGCTGCCAAGGTAAGCTTCAGCGATCTCACGCA
TCTTGATGAGAACCATAGAGGAGATC