Detailed information on CNT30571839


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 2e-32

BLAST vs NONCODE:
NONTCAT002529, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564059Vitis viniferaActinidia chinensis22.5824.4482.6598forward
CNT30609330Vitis viniferaGossypium raimondii55.9953.5282.72243forward

Expression of CNT30571839

Peptides detected in this lncRNA

>peptide 1 (39 aa)
CSKRRSRIHSSRRSGKNHRTHICNSKSHRSGNRKSHRTH*

>peptide 2 (30 aa)
MVGAAAVVEQLGMDKEMVKKTLWSDRKPWH*

>peptide 3 (68 aa)
AANGVLVFTAAVDQAKIIELIYATASLIARAIGKVTALTRGRARRGRRWRGWWGRRRWWNSWGWIRRW*

>peptide 4 (56 aa)
MVNQCSSLCRSTPPFPSLFPMNSYKSSSLHYLQSHSQLSELHGQCHLDHPSNPQHIF

Sequence

>CNT30571839
GTGCAGCAAACGGCGTTCTCGTATTCACAGCAGCCGTAGATCAGGCAAAAATCATAGAACTCATATATGCAACAGCAAGTCTCATCGCTCGGGCAATAGG
AAAAGTCACCGCACTCACTAGGGGAAGGGCCAGGAGAGGGAGGCGGTGGCGGGGATGGTGGGGGCGGCGGCGGTGGTGGAACAGCTGGGGATGGATAAGG
AGATGGTGAAGAAGACTCTTTGGTCGGATAGGAAGCCATGGCATTGATGGCGCATTCTCCATATGGTAAATCAGTGTTCCTCTTTATGTAGAAGTACCCC
TCCATTCCCCAGCTTGTTCCCCATGAATTCTTACAAATCCAGTAGTCTTCACTATCTTCAGAGCCATAGCCAACTATCAGAACTGCATGGTCAATGTCAT
CTGGATCATCCGAGCAATCCCCAGCATATATTCC