Detailed information on CNT30705576


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 1e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30562261Prunus aviumActinidia chinensis13.320.3390.3262forward
CNT30609330Prunus aviumGossypium raimondii37.7738.7787.5176forward
CNT30714745Prunus aviumMalus domestica golden44.8544.7591.87209forward
CNT30571877Prunus aviumVitis vinifera43.9951.980.49205forward

Expression of CNT30705576

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RDHHQHHKWGNHLGNSIQFRCSKPHSDIHSNHR*

>peptide 2 (32 aa)
MNSLQSSNLHRLRNRILQPEVHGQCHLDCRSSH

>peptide 3 (60 aa)
ETIINITNGVIIWATVFSSGAANRILIFTATIDEAVVKEFKEATTCLITWTIGEVSAVTW*

Sequence

>CNT30705576
AGAGACCATCATCAACATCACAAATGGGGTAATCATTTGGGCAACAGTATTCAGTTCCGGTGCAGCAAACCGCATTCTGATATTCACAGCAACCATAGAT
GAGGCAGTAGTCAAGGAATTCAAAGAGGCAACAACATGTCTCATCACTTGGACAATAGGAGAAGTCTCCGCAGTCACTTGGTGAAGGAGAGGGAGGTGGC
GGTGGTGGTGTCACTGGTGTAGGTGGTGGTGGTGGAGCTGTTGGGGATGGTGCAGATGACTCTTTGGTAGGATATGAAGCCATGGCATTGATTGCACAAA
CCCCATATTTTAAATTAGTGTTCCTTCTTATGTAAATGTATCCATCTATCCCCCAACTAGTCCCCCATGAATTCTTTACAATCCAGTAATCTTCATCGCC
TTCGGAACCGTATCCTACAACCAGAGGTGCATGGTCAATGTCATCTGGATTGTCGGAGCAGTCACC