Detailed information on CNT30652619


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 3e-43

BLAST vs NONCODE:
NONTCAT002529, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30609330Rosa chinensisGossypium raimondii39.3940.0985.16182forward

Expression of CNT30652619

Peptides detected in this lncRNA

>peptide 1 (60 aa)
QAFLDITNGIVTWTAVFSSSAANRILIFTATINQAVVKEFIEATTCLISWTIGEVSALAW*

>peptide 2 (84 aa)
GLPRYHKWDSHLDSSIQFQCSKPHSHIHSNHKSSSSQRIHRGNNMSHQLDNRRSLRIGLVKERVVVVVVEELEMDKERVQLTLW*

>peptide 3 (35 aa)
MNSLQSSNLHRFQNHILLLERHDQCHLDRRSNHRHK

Sequence

>CNT30652619
CAGGCCTTCCTCGATATCACAAATGGGATAGTCACTTGGACAGCAGTATTCAGTTCCAGTGCAGCAAACCGCATTCTCATATTCACAGCAACCATAAATC
AAGCAGTAGTCAAAGAATTCATAGAGGCAACAACATGTCTCATCAGCTGGACAATAGGAGAAGTCTCCGCATTGGCTTGGTGAAGGAGAGGGTGGTGGTG
GTGGTGGTGGAGGAGTTGGAGATGGATAAGGAGAGGGTGCAACTGACTCTTTGGTAGGATATGAAGCCATGGCATTGACTGCACAAACCCCATATGGCAA
ATCGGTGTTCCTTCTGAGGTAAAAGTATCCTTCAATCCCCCAACTAGTTCCCCATGAATTCTTTACAATCCAGTAATCTTCACCGTTTTCAGAACCATAT
CCTACTATTAGAACGGCATGATCAATGTCATTTGGATCGTCGGAGCAATCACCGTCATAAAT