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Detailed information on CNT30596822


BLAST search results

BLAST vs Swiss-Prot:
sp|P12332|CB21_SILLB, E-value = 2e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186748Oryza meridionalisSecale cereale46.7147.0993.2397forward
CNT30297962Oryza meridionalisTriticum aestivum49.5360.4992.4421forward
CNT30554896Oryza meridionalisOryza glaberrima63.8856.8695.58543forward
CNT30252168Oryza meridionalisAvena sativa50.4751.9490.44429forward
CNT30664228Oryza meridionalisTriticum dicoccoides49.5350.8592.64421forward
CNT30685463Oryza meridionalisTriticum urartu49.5347.392.4421forward
CNT30108137Oryza meridionalisOryza longistaminata48.3552.0999.51411forward
CNT30604587Oryza meridionalisOryza punctata44.7162.694.47380forward

Expression of CNT30596822

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

>peptide 2 (31 aa)
YVFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

Sequence

>CNT30596822
TATGTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAG
AATAACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACAC
AACACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCT
CTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAG
GTAGTCGAGCCCCCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACG
CAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCC
AGCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCC
CGACGCCGCCGGCTTGGGCTTCGCGGCGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCACTG
AGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGAGTGAGTTGGGAGTT